Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18e' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6972644-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.70
PID: 6669
Logging PID: 6670
Task:
{'appstream': False,
 'background': True,
 'build_id': 6972644,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '6a1e15509098c91f653b329eac361b712a55cecb',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:2/seqan2',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'seqan2',
 'package_version': '2.4.0-22',
 'project_dirname': 'openblas-0.3.23:pr:2',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/jjames',
 'source_json': {},
 'source_type': None,
 'submitter': 'https://src.fedoraproject.org/user/jjames',
 'tags': [],
 'task_id': '6972644-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:2/seqan2 /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2 --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:2/seqan2', '/var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2'...

Running: git checkout 6a1e15509098c91f653b329eac361b712a55cecb --

cmd: ['git', 'checkout', '6a1e15509098c91f653b329eac361b712a55cecb', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2
rc: 0
stdout: 
stderr: Note: switching to '6a1e15509098c91f653b329eac361b712a55cecb'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 6a1e155 automatic import of seqan2

Running: copr-distgit-client sources

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading seqan-seqan-v2.4.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o seqan-seqan-v2.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:2/seqan2/seqan-seqan-v2.4.0.tar.gz/md5/d899821e295fed0a22e08099f40cbc17/seqan-seqan-v2.4.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  104M  100  104M    0     0  42.5M      0  0:00:02  0:00:02 --:--:-- 42.5M
INFO: Reading stdout from command: md5sum seqan-seqan-v2.4.0.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2/seqan2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706587000.260269 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2/seqan2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706587000.260269 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2/seqan2.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.4
INFO: Mock Version: 5.4
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706587000.260269/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706587000.260269/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/ce4b181f320b94a3f9585d68509b7a446efc48387e85381cb26f360bc84270f2/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/ce4b181f320b94a3f9585d68509b7a446efc48387e85381cb26f360bc84270f2/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  40 MB/s |  26 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  43 MB/s |  73 MB     00:01    
fedora                                           20 MB/s |  75 MB     00:03    
Last metadata expiration check: 0:00:05 ago on Tue Jan 30 03:57:11 2024.
Dependencies resolved.
==========================================================================================================
 Package        Arch    Version       Repository                                                      Size
==========================================================================================================
Installing:
 dnf5           x86_64  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  565 k
 dnf5-plugins   x86_64  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  332 k
Installing dependencies:
 fmt            x86_64  10.2.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  125 k
 libdnf5        x86_64  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  957 k
 libdnf5-cli    x86_64  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  224 k
 sdbus-cpp      x86_64  1.4.0-1.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k

Transaction Summary
==========================================================================================================
Install  6 Packages

Total download size: 2.3 M
Installed size: 6.3 M
Downloading Packages:
(1/6): dnf5-plugins-5.1.11-3.fc40.x86_64.rpm    3.6 MB/s | 332 kB     00:00    
(2/6): fmt-10.2.1-3.fc40.x86_64.rpm             1.4 MB/s | 125 kB     00:00    
(3/6): libdnf5-cli-5.1.11-3.fc40.x86_64.rpm      11 MB/s | 224 kB     00:00    
(4/6): dnf5-5.1.11-3.fc40.x86_64.rpm            4.8 MB/s | 565 kB     00:00    
(5/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm        4.7 MB/s | 109 kB     00:00    
(6/6): libdnf5-5.1.11-3.fc40.x86_64.rpm          16 MB/s | 957 kB     00:00    
--------------------------------------------------------------------------------
Total                                            15 MB/s | 2.3 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-3.fc40.x86_64                               1/6 
  Installing       : libdnf5-5.1.11-3.fc40.x86_64                           2/6 
  Installing       : libdnf5-cli-5.1.11-3.fc40.x86_64                       3/6 
  Installing       : dnf5-5.1.11-3.fc40.x86_64                              4/6 
  Installing       : sdbus-cpp-1.4.0-1.fc40.x86_64                          5/6 
  Installing       : dnf5-plugins-5.1.11-3.fc40.x86_64                      6/6 
  Running scriptlet: dnf5-plugins-5.1.11-3.fc40.x86_64                      6/6 

Installed:
  dnf5-5.1.11-3.fc40.x86_64              dnf5-plugins-5.1.11-3.fc40.x86_64      
  fmt-10.2.1-3.fc40.x86_64               libdnf5-5.1.11-3.fc40.x86_64           
  libdnf5-cli-5.1.11-3.fc40.x86_64       sdbus-cpp-1.4.0-1.fc40.x86_64          

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706587000.260269/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-3.fc40.x86_64
  dnf5-plugins-5.1.11-3.fc40.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  20.9 MiB/s |  20.7 MiB |  00m01s
 Copr repository                        100% |  29.9 MiB/s |   4.5 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  36.5 MiB/s |  17.0 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository                                                         Size
Installing group/module packages:                                                                                                          
 bash                             x86_64 5.2.26-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.1 MiB
 bzip2                            x86_64 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  91.7 KiB
 coreutils                        x86_64 9.4-5.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 MiB
 cpio                             x86_64 2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                        x86_64 3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common            noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 KiB
 findutils                        x86_64 1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 gawk                             x86_64 5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack           x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                             x86_64 3.11-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                             x86_64 1.12-8.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.0 KiB
 info                             x86_64 7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.8 KiB
 patch                            x86_64 2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.8 KiB
 redhat-rpm-config                noarch 280-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.2 KiB
 rpm-build                        x86_64 4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.7 KiB
 sed                              x86_64 4.8-15.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.9 KiB
 shadow-utils                     x86_64 2:4.14.0-4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                              x86_64 2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 unzip                            x86_64 6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 382.8 KiB
 util-linux                       x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.5 MiB
 which                            x86_64 2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.2 KiB
 xz                               x86_64 5.4.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
Installing dependencies:                                                                                                                   
 alternatives                     x86_64 1.26-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  62.3 KiB
 ansible-srpm-macros              noarch 1-14.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                       x86_64 4.0-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 311.3 KiB
 authselect                       x86_64 1.5.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.6 KiB
 authselect-libs                  x86_64 1.5.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 987.8 KiB
 basesystem                       noarch 11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                         x86_64 2.41-31.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.4 MiB
 binutils-gold                    x86_64 2.41-31.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 bzip2-libs                       x86_64 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.7 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                 x86_64 9.4-5.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.4 MiB
 cracklib                         x86_64 2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB
 crypto-policies                  noarch 20231204-3.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB
 curl                             x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.4 KiB
 cyrus-sasl-lib                   x86_64 2.1.28-19.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 debugedit                        x86_64 5.0-14.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.0 KiB
 dwz                              x86_64 0.15-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB
 ed                               x86_64 1.20-2.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.4 KiB
 efi-srpm-macros                  noarch 5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                         x86_64 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 elfutils-debuginfod-client       x86_64 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.9 KiB
 elfutils-default-yama-scope      noarch 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                  x86_64 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 elfutils-libs                    x86_64 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 642.1 KiB
 fedora-gpg-keys                  noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB
 fedora-release                   noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic    noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                     noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide             noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                             x86_64 5.45-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB
 file-libs                        x86_64 5.45-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                       x86_64 3.18-8.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                noarch 0.2.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 fpc-srpm-macros                  noarch 1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                      x86_64 14.1-8.fc40                copr_base                                                      12.3 MiB
 gdbm                             x86_64 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 460.9 KiB
 gdbm-libs                        x86_64 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB
 ghc-srpm-macros                  noarch 1.6.1-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0   B
 glibc                            x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.7 MiB
 glibc-common                     x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 gmp                              x86_64 1:6.2.1-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.6 KiB
 gnat-srpm-macros                 noarch 6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                   noarch 3.3.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.6 KiB
 jansson                          x86_64 2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.3 KiB
 kernel-srpm-macros               noarch 1.0-22.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                    x86_64 1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.4 KiB
 krb5-libs                        x86_64 1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                           x86_64 2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0 KiB
 libarchive                       x86_64 3.7.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 914.6 KiB
 libattr                          x86_64 2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 libblkid                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.0 KiB
 libbrotli                        x86_64 1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 829.5 KiB
 libcap                           x86_64 2.69-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217.2 KiB
 libcap-ng                        x86_64 0.8.4-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  73.1 KiB
 libcom_err                       x86_64 1.47.0-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.2 KiB
 libcurl                          x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 768.6 KiB
 libeconf                         x86_64 0.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  52.0 KiB
 libevent                         x86_64 2.1.12-11.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 895.6 KiB
 libfdisk                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 362.9 KiB
 libffi                           x86_64 3.4.4-7.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.6 KiB
 libgcc                           x86_64 14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 270.6 KiB
 libgomp                          x86_64 14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.8 KiB
 libidn2                          x86_64 2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.1 KiB
 libmount                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 352.1 KiB
 libnghttp2                       x86_64 1.59.0-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166.1 KiB
 libnsl2                          x86_64 2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 libpkgconf                       x86_64 1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.1 KiB
 libpsl                           x86_64 0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libpwquality                     x86_64 1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.8 KiB
 libselinux                       x86_64 3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.0 KiB
 libsemanage                      x86_64 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 293.5 KiB
 libsepol                         x86_64 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 802.0 KiB
 libsmartcols                     x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.1 KiB
 libssh                           x86_64 0.10.6-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 509.3 KiB
 libssh-config                    noarch 0.10.6-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                        x86_64 14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                         x86_64 4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.7 KiB
 libtirpc                         x86_64 1.3.4-1.rc2.fc40.2         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.8 KiB
 libunistring                     x86_64 1.1-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                      x86_64 1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.7 KiB
 libuuid                          x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.5 KiB
 libverto                         x86_64 0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.5 KiB
 libxcrypt                        x86_64 4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.8 KiB
 libxml2                          x86_64 2.12.4-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libzstd                          x86_64 1.5.5-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 772.0 KiB
 lua-libs                         x86_64 5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 281.1 KiB
 lua-srpm-macros                  noarch 1-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                         x86_64 1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.4 KiB
 mpfr                             x86_64 4.2.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 832.0 KiB
 ncurses-base                     noarch 6.4-11.20240113.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                     x86_64 6.4-11.20240113.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.2 KiB
 ocaml-srpm-macros                noarch 9-3.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros             noarch 2-16.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0   B
 openldap                         x86_64 2.6.6-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 641.5 KiB
 openssl-libs                     x86_64 1:3.1.4-4.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.3 MiB
 p11-kit                          x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 p11-kit-trust                    x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 459.4 KiB
 package-notes-srpm-macros        noarch 0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                              x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 pam-libs                         x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB
 pcre2                            x86_64 10.42-2.fc40.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 637.6 KiB
 pcre2-syntax                     noarch 10.42-2.fc40.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-srpm-macros                 noarch 1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                          x86_64 1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  79.8 KiB
 pkgconf-m4                       noarch 1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config               x86_64 1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0   B
 popt                             x86_64 1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB
 publicsuffix-list-dafsa          noarch 20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-3.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                  noarch 6.6.1-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                         x86_64 8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB
 rpm                              x86_64 4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                   x86_64 4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.4 KiB
 rpm-libs                         x86_64 4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 710.0 KiB
 rpm-sequoia                      x86_64 1.6.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 rust-srpm-macros                 noarch 25.2-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 KiB
 setup                            noarch 2.14.5-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB
 sqlite-libs                      x86_64 3.45.0-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 systemd-libs                     x86_64 255.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 util-linux-core                  x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 xxhash-libs                      x86_64 0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.5 KiB
 xz-libs                          x86_64 5.4.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.8 KiB
 zig-srpm-macros                  noarch 1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                              x86_64 3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB
 zlib-ng-compat                   x86_64 2.1.6-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB
 zstd                             x86_64 1.5.5-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
Installing groups:                                                                                                                         
 Buildsystem building group                                                                                                                

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation 177 MiB will be used (install 177 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-18.fc40.x86_64  100% | 662.7 KiB/s |  52.4 KiB |  00m00s
[  2/152] bash-0:5.2.26-2.fc40.x86_64   100% |  16.1 MiB/s |   1.8 MiB |  00m00s
[  3/152] cpio-0:2.15-1.fc40.x86_64     100% |   7.1 MiB/s | 285.1 KiB |  00m00s
[  4/152] coreutils-0:9.4-5.fc40.x86_64 100% |   8.9 MiB/s |   1.1 MiB |  00m00s
[  5/152] diffutils-0:3.10-5.fc40.x86_6 100% |  14.9 MiB/s | 396.8 KiB |  00m00s
[  6/152] fedora-release-common-0:40-0. 100% |   1.0 MiB/s |  20.5 KiB |  00m00s
[  7/152] findutils-1:4.9.0-8.fc40.x86_ 100% |  19.6 MiB/s | 482.5 KiB |  00m00s
[  8/152] glibc-minimal-langpack-0:2.38 100% |   3.8 MiB/s |  96.5 KiB |  00m00s
[  9/152] gawk-0:5.3.0-3.fc40.x86_64    100% |  36.5 MiB/s |   1.1 MiB |  00m00s
[ 10/152] grep-0:3.11-7.fc40.x86_64     100% |  11.3 MiB/s | 289.7 KiB |  00m00s
[ 11/152] gzip-0:1.12-8.fc40.x86_64     100% |   7.8 MiB/s | 159.4 KiB |  00m00s
[ 12/152] info-0:7.1-2.fc40.x86_64      100% |   8.1 MiB/s | 182.3 KiB |  00m00s
[ 13/152] patch-0:2.7.6-24.fc40.x86_64  100% |   6.4 MiB/s | 130.7 KiB |  00m00s
[ 14/152] redhat-rpm-config-0:280-1.fc4 100% |   3.7 MiB/s |  75.2 KiB |  00m00s
[ 15/152] rpm-build-0:4.19.1-4.fc40.x86 100% |   3.3 MiB/s |  70.5 KiB |  00m00s
[ 16/152] sed-0:4.8-15.fc40.x86_64      100% |  13.2 MiB/s | 297.7 KiB |  00m00s
[ 17/152] tar-2:1.35-3.fc40.x86_64      100% |  29.6 MiB/s | 847.4 KiB |  00m00s
[ 18/152] unzip-0:6.0-63.fc40.x86_64    100% |   8.6 MiB/s | 184.5 KiB |  00m00s
[ 19/152] shadow-utils-2:4.14.0-4.fc40. 100% |  24.4 MiB/s |   1.2 MiB |  00m00s
[ 20/152] which-0:2.21-41.fc40.x86_64   100% |   2.2 MiB/s |  41.4 KiB |  00m00s
[ 21/152] util-linux-0:2.39.3-4.fc40.x8 100% |  35.6 MiB/s |   1.1 MiB |  00m00s
[ 22/152] xz-0:5.4.6-1.fc40.x86_64      100% |  19.2 MiB/s | 531.4 KiB |  00m00s
[ 23/152] rpm-0:4.19.1-4.fc40.x86_64    100% |  20.0 MiB/s | 512.0 KiB |  00m00s
[ 24/152] coreutils-common-0:9.4-5.fc40 100% |  45.2 MiB/s |   2.1 MiB |  00m00s
[ 25/152] xz-libs-0:5.4.6-1.fc40.x86_64 100% |   3.8 MiB/s | 109.6 KiB |  00m00s
[ 26/152] rpm-libs-0:4.19.1-4.fc40.x86_ 100% |  13.1 MiB/s | 308.5 KiB |  00m00s
[ 27/152] rpm-build-libs-0:4.19.1-4.fc4 100% |   4.6 MiB/s |  95.1 KiB |  00m00s
[ 28/152] audit-libs-0:4.0-7.fc40.x86_6 100% |   4.9 MiB/s | 120.0 KiB |  00m00s
[ 29/152] authselect-libs-0:1.5.0-3.fc4 100% |   8.1 MiB/s | 233.7 KiB |  00m00s
[ 30/152] glibc-0:2.38.9000-35.fc40.x86 100% |  44.5 MiB/s |   2.2 MiB |  00m00s
[ 31/152] libblkid-0:2.39.3-4.fc40.x86_ 100% |   4.9 MiB/s | 114.4 KiB |  00m00s
[ 32/152] libcap-ng-0:0.8.4-4.fc40.x86_ 100% |   1.7 MiB/s |  32.6 KiB |  00m00s
[ 33/152] libfdisk-0:2.39.3-4.fc40.x86_ 100% |   7.8 MiB/s | 159.3 KiB |  00m00s
[ 34/152] libmount-0:2.39.3-4.fc40.x86_ 100% |   7.2 MiB/s | 153.9 KiB |  00m00s
[ 35/152] libselinux-0:3.6-4.fc40.x86_6 100% |   4.7 MiB/s |  87.5 KiB |  00m00s
[ 36/152] libsmartcols-0:2.39.3-4.fc40. 100% |   2.8 MiB/s |  67.6 KiB |  00m00s
[ 37/152] libutempter-0:1.2.1-13.fc40.x 100% |   1.4 MiB/s |  26.4 KiB |  00m00s
[ 38/152] libuuid-0:2.39.3-4.fc40.x86_6 100% |   1.4 MiB/s |  28.4 KiB |  00m00s
[ 39/152] ncurses-libs-0:6.4-11.2024011 100% |  14.8 MiB/s | 332.9 KiB |  00m00s
[ 40/152] ncurses-base-0:6.4-11.2024011 100% |   3.1 MiB/s |  63.6 KiB |  00m00s
[ 41/152] pam-0:1.6.0-1.fc40.x86_64     100% |  19.4 MiB/s | 516.0 KiB |  00m00s
[ 42/152] pam-libs-0:1.6.0-1.fc40.x86_6 100% |   2.8 MiB/s |  56.9 KiB |  00m00s
[ 43/152] authselect-0:1.5.0-3.fc40.x86 100% |   6.7 MiB/s | 144.0 KiB |  00m00s
[ 44/152] readline-0:8.2-8.fc40.x86_64  100% |  11.0 MiB/s | 213.3 KiB |  00m00s
[ 45/152] util-linux-core-0:2.39.3-4.fc 100% |  19.1 MiB/s | 489.5 KiB |  00m00s
[ 46/152] systemd-libs-0:255.3-1.fc40.x 100% |  22.3 MiB/s | 707.0 KiB |  00m00s
[ 47/152] zlib-ng-compat-0:2.1.6-2.fc40 100% |   3.1 MiB/s |  77.1 KiB |  00m00s
[ 48/152] bzip2-libs-0:1.0.8-18.fc40.x8 100% |   2.1 MiB/s |  40.9 KiB |  00m00s
[ 49/152] libacl-0:2.3.2-1.fc40.x86_64  100% |   1.2 MiB/s |  24.4 KiB |  00m00s
[ 50/152] libcap-0:2.69-3.fc40.x86_64   100% |   4.0 MiB/s |  82.0 KiB |  00m00s
[ 51/152] libgcc-0:14.0.1-0.4.fc40.x86_ 100% |   5.8 MiB/s | 112.2 KiB |  00m00s
[ 52/152] libzstd-0:1.5.5-5.fc40.x86_64 100% |  13.6 MiB/s | 306.0 KiB |  00m00s
[ 53/152] lz4-libs-0:1.9.4-6.fc40.x86_6 100% |   3.6 MiB/s |  67.2 KiB |  00m00s
[ 54/152] libattr-0:2.5.2-3.fc40.x86_64 100% | 899.9 KiB/s |  18.0 KiB |  00m00s
[ 55/152] libeconf-0:0.5.2-3.fc40.x86_6 100% |   1.7 MiB/s |  30.4 KiB |  00m00s
[ 56/152] libsemanage-0:3.6-3.fc40.x86_ 100% |   5.7 MiB/s | 116.4 KiB |  00m00s
[ 57/152] libxcrypt-0:4.4.36-5.fc40.x86 100% |   6.1 MiB/s | 118.1 KiB |  00m00s
[ 58/152] setup-0:2.14.5-2.fc40.noarch  100% |   6.9 MiB/s | 148.1 KiB |  00m00s
[ 59/152] lua-libs-0:5.4.6-5.fc40.x86_6 100% |   7.2 MiB/s | 131.9 KiB |  00m00s
[ 60/152] popt-0:1.19-6.fc40.x86_64     100% |   3.1 MiB/s |  59.6 KiB |  00m00s
[ 61/152] rpm-sequoia-0:1.6.0-2.fc40.x8 100% |  31.8 MiB/s | 847.5 KiB |  00m00s
[ 62/152] sqlite-libs-0:3.45.0-2.fc40.x 100% |  23.7 MiB/s | 704.4 KiB |  00m00s
[ 63/152] elfutils-libelf-0:0.190-6.fc4 100% |   7.9 MiB/s | 194.5 KiB |  00m00s
[ 64/152] elfutils-libs-0:0.190-6.fc40. 100% |  12.5 MiB/s | 255.5 KiB |  00m00s
[ 65/152] elfutils-0:0.190-6.fc40.x86_6 100% |  19.4 MiB/s | 517.2 KiB |  00m00s
[ 66/152] file-libs-0:5.45-3.fc40.x86_6 100% |  27.6 MiB/s | 762.7 KiB |  00m00s
[ 67/152] file-0:5.45-3.fc40.x86_64     100% |   2.3 MiB/s |  48.9 KiB |  00m00s
[ 68/152] libgomp-0:14.0.1-0.4.fc40.x86 100% |  14.7 MiB/s | 331.9 KiB |  00m00s
[ 69/152] elfutils-debuginfod-client-0: 100% |   1.8 MiB/s |  37.8 KiB |  00m00s
[ 70/152] debugedit-0:5.0-14.fc40.x86_6 100% |   2.6 MiB/s |  78.7 KiB |  00m00s
[ 71/152] pkgconf-pkg-config-0:1.9.5-4. 100% | 354.0 KiB/s |   9.6 KiB |  00m00s
[ 72/152] pkgconf-0:1.9.5-4.fc40.x86_64 100% |   1.5 MiB/s |  42.3 KiB |  00m00s
[ 73/152] binutils-0:2.41-31.fc40.x86_6 100% |  71.4 MiB/s |   6.2 MiB |  00m00s
[ 74/152] pkgconf-m4-0:1.9.5-4.fc40.noa 100% | 405.6 KiB/s |  13.8 KiB |  00m00s
[ 75/152] libpkgconf-0:1.9.5-4.fc40.x86 100% |   2.0 MiB/s |  37.2 KiB |  00m00s
[ 76/152] zstd-0:1.5.5-5.fc40.x86_64    100% |  17.9 MiB/s | 475.6 KiB |  00m00s
[ 77/152] libarchive-0:3.7.2-3.fc40.x86 100% |  14.7 MiB/s | 407.1 KiB |  00m00s
[ 78/152] ansible-srpm-macros-0:1-14.fc 100% |   1.1 MiB/s |  20.8 KiB |  00m00s
[ 79/152] glibc-gconv-extra-0:2.38.9000 100% |  40.7 MiB/s |   1.6 MiB |  00m00s
[ 80/152] dwz-0:0.15-5.fc40.x86_64      100% |   6.1 MiB/s | 137.6 KiB |  00m00s
[ 81/152] efi-srpm-macros-0:5-11.fc40.n 100% |   1.2 MiB/s |  22.3 KiB |  00m00s
[ 82/152] forge-srpm-macros-0:0.2.0-3.f 100% |   1.0 MiB/s |  18.7 KiB |  00m00s
[ 83/152] fonts-srpm-macros-1:2.0.5-14. 100% |   1.4 MiB/s |  26.5 KiB |  00m00s
[ 84/152] fpc-srpm-macros-0:1.3-12.fc40 100% | 460.8 KiB/s |   7.8 KiB |  00m00s
[ 85/152] gnat-srpm-macros-0:6-5.fc40.n 100% | 519.0 KiB/s |   8.8 KiB |  00m00s
[ 86/152] ghc-srpm-macros-0:1.6.1-5.fc4 100% | 435.1 KiB/s |   8.3 KiB |  00m00s
[ 87/152] go-srpm-macros-0:3.3.1-3.fc40 100% |   1.5 MiB/s |  27.5 KiB |  00m00s
[ 88/152] lua-srpm-macros-0:1-11.fc40.n 100% | 479.3 KiB/s |   8.6 KiB |  00m00s
[ 89/152] kernel-srpm-macros-0:1.0-22.f 100% | 506.0 KiB/s |   9.6 KiB |  00m00s
[ 90/152] ocaml-srpm-macros-0:9-3.fc40. 100% | 533.7 KiB/s |   9.1 KiB |  00m00s
[ 91/152] package-notes-srpm-macros-0:0 100% | 585.0 KiB/s |   9.9 KiB |  00m00s
[ 92/152] openblas-srpm-macros-0:2-16.f 100% | 394.7 KiB/s |   7.5 KiB |  00m00s
[ 93/152] perl-srpm-macros-0:1-53.fc40. 100% | 493.0 KiB/s |   8.4 KiB |  00m00s
[ 94/152] python-srpm-macros-0:3.12-7.f 100% |   1.3 MiB/s |  23.8 KiB |  00m00s
[ 95/152] pyproject-srpm-macros-0:1.12. 100% | 717.3 KiB/s |  13.6 KiB |  00m00s
[ 96/152] qt5-srpm-macros-0:5.15.12-3.f 100% | 426.5 KiB/s |   8.5 KiB |  00m00s
[ 97/152] rust-srpm-macros-0:25.2-3.fc4 100% | 704.8 KiB/s |  12.7 KiB |  00m00s
[ 98/152] qt6-srpm-macros-0:6.6.1-5.fc4 100% | 467.0 KiB/s |   8.9 KiB |  00m00s
[ 99/152] zig-srpm-macros-0:1-2.fc40.no 100% | 472.9 KiB/s |   8.0 KiB |  00m00s
[100/152] ed-0:1.20-2.fc40.x86_64       100% |   4.2 MiB/s |  81.8 KiB |  00m00s
[101/152] zip-0:3.0-40.fc40.x86_64      100% |  11.8 MiB/s | 264.8 KiB |  00m00s
[102/152] gdbm-1:1.23-6.fc40.x86_64     100% |   7.6 MiB/s | 147.4 KiB |  00m00s
[103/152] gdbm-libs-1:1.23-6.fc40.x86_6 100% |   2.7 MiB/s |  56.2 KiB |  00m00s
[104/152] libnsl2-0:2.0.1-1.fc40.x86_64 100% |   1.4 MiB/s |  29.6 KiB |  00m00s
[105/152] libpwquality-0:1.4.5-9.fc40.x 100% |   5.6 MiB/s | 108.3 KiB |  00m00s
[106/152] libtirpc-0:1.3.4-1.rc2.fc40.2 100% |   4.2 MiB/s |  93.9 KiB |  00m00s
[107/152] crypto-policies-0:20231204-3. 100% |   2.9 MiB/s |  68.8 KiB |  00m00s
[108/152] openssl-libs-1:3.1.4-4.fc40.x 100% |  41.6 MiB/s |   2.1 MiB |  00m00s
[109/152] ca-certificates-0:2023.2.62_v 100% |  19.1 MiB/s | 862.1 KiB |  00m00s
[110/152] libcom_err-0:1.47.0-4.fc40.x8 100% |   1.3 MiB/s |  25.9 KiB |  00m00s
[111/152] krb5-libs-0:1.21.2-5.fc40.x86 100% |  25.3 MiB/s | 751.4 KiB |  00m00s
[112/152] libsepol-0:3.6-3.fc40.x86_64  100% |  14.4 MiB/s | 340.1 KiB |  00m00s
[113/152] pcre2-0:10.42-2.fc40.2.x86_64 100% |  11.5 MiB/s | 235.8 KiB |  00m00s
[114/152] cracklib-0:2.9.11-5.fc40.x86_ 100% |   4.2 MiB/s |  81.6 KiB |  00m00s
[115/152] pcre2-syntax-0:10.42-2.fc40.2 100% |   6.6 MiB/s | 142.7 KiB |  00m00s
[116/152] libverto-0:0.3.2-8.fc40.x86_6 100% |   1.1 MiB/s |  20.5 KiB |  00m00s
[117/152] keyutils-libs-0:1.6.3-3.fc40. 100% |   1.5 MiB/s |  31.5 KiB |  00m00s
[118/152] libxml2-0:2.12.4-3.fc40.x86_6 100% |  24.8 MiB/s | 685.1 KiB |  00m00s
[119/152] basesystem-0:11-20.fc40.noarc 100% | 378.3 KiB/s |   7.2 KiB |  00m00s
[120/152] glibc-common-0:2.38.9000-35.f 100% |  14.7 MiB/s | 376.5 KiB |  00m00s
[121/152] filesystem-0:3.18-8.fc40.x86_ 100% |  28.1 MiB/s |   1.1 MiB |  00m00s
[122/152] gmp-1:6.2.1-8.fc40.x86_64     100% |  14.5 MiB/s | 312.5 KiB |  00m00s
[123/152] mpfr-0:4.2.1-3.fc40.x86_64    100% |  14.2 MiB/s | 349.0 KiB |  00m00s
[124/152] fedora-repos-0:40-0.2.noarch  100% | 519.4 KiB/s |   9.3 KiB |  00m00s
[125/152] elfutils-default-yama-scope-0 100% | 678.9 KiB/s |  12.9 KiB |  00m00s
[126/152] libstdc++-0:14.0.1-0.4.fc40.x 100% |  29.3 MiB/s | 870.9 KiB |  00m00s
[127/152] p11-kit-trust-0:0.25.3-1.fc40 100% |   5.8 MiB/s | 141.5 KiB |  00m00s
[128/152] p11-kit-0:0.25.3-1.fc40.x86_6 100% |  17.7 MiB/s | 507.6 KiB |  00m00s
[129/152] alternatives-0:1.26-3.fc40.x8 100% |   2.2 MiB/s |  39.9 KiB |  00m00s
[130/152] jansson-0:2.13.1-9.fc40.x86_6 100% |   2.3 MiB/s |  44.2 KiB |  00m00s
[131/152] binutils-gold-0:2.41-31.fc40. 100% |  28.3 MiB/s | 781.6 KiB |  00m00s
[132/152] libtasn1-0:4.19.0-6.fc40.x86_ 100% |   3.6 MiB/s |  73.7 KiB |  00m00s
[133/152] libffi-0:3.4.4-7.fc40.x86_64  100% |   1.9 MiB/s |  39.4 KiB |  00m00s
[134/152] fedora-gpg-keys-0:40-0.2.noar 100% |   6.1 MiB/s | 119.4 KiB |  00m00s
[135/152] fedora-repos-rawhide-0:40-0.2 100% | 524.9 KiB/s |   8.9 KiB |  00m00s
[136/152] fedora-release-0:40-0.29.noar 100% | 556.3 KiB/s |  10.0 KiB |  00m00s
[137/152] curl-0:8.5.0-2.fc40.x86_64    100% |  14.4 MiB/s | 367.5 KiB |  00m00s
[138/152] fedora-release-identity-basic 100% | 600.0 KiB/s |  10.8 KiB |  00m00s
[139/152] libcurl-0:8.5.0-2.fc40.x86_64 100% |  15.2 MiB/s | 343.2 KiB |  00m00s
[140/152] xxhash-libs-0:0.8.2-2.fc40.x8 100% |   1.9 MiB/s |  36.9 KiB |  00m00s
[141/152] libbrotli-0:1.1.0-3.fc40.x86_ 100% |  15.7 MiB/s | 338.4 KiB |  00m00s
[142/152] libidn2-0:2.3.7-1.fc40.x86_64 100% |   5.0 MiB/s | 112.4 KiB |  00m00s
[143/152] libnghttp2-0:1.59.0-2.fc40.x8 100% |   4.1 MiB/s |  75.3 KiB |  00m00s
[144/152] libpsl-0:0.21.5-3.fc40.x86_64 100% |   3.0 MiB/s |  63.9 KiB |  00m00s
[145/152] libssh-0:0.10.6-4.fc40.x86_64 100% |   8.9 MiB/s | 210.6 KiB |  00m00s
[146/152] libssh-config-0:0.10.6-4.fc40 100% | 430.9 KiB/s |   9.0 KiB |  00m00s
[147/152] gdb-minimal-0:14.1-8.fc40.x86 100% |  32.5 MiB/s |   4.2 MiB |  00m00s
[148/152] openldap-0:2.6.6-1.fc39.x86_6 100% |   9.2 MiB/s | 254.8 KiB |  00m00s
[149/152] cyrus-sasl-lib-0:2.1.28-19.fc 100% |  24.1 MiB/s | 789.3 KiB |  00m00s
[150/152] libevent-0:2.1.12-11.fc40.x86 100% |  11.4 MiB/s | 257.0 KiB |  00m00s
[151/152] libunistring-0:1.1-7.fc40.x86 100% |  23.2 MiB/s | 545.5 KiB |  00m00s
[152/152] publicsuffix-list-dafsa-0:202 100% |   2.8 MiB/s |  58.1 KiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% |  38.0 MiB/s |  51.6 MiB |  00m01s
Running transaction
[  1/154] Verify package files          100% | 804.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
[  2/154] Prepare transaction           100% |   2.7 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 133.0 MiB/s | 272.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.4.fc40.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.4.fc40.x86_64
[  4/154] Installing crypto-policies-0: 100% |  25.3 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20231204-3.git1e3a2e4.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20231204-3.git1e3a2e4.fc40.no
[  5/154] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  32.7 MiB/s | 167.6 KiB |  00m00s
[  7/154] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/154] Installing fedora-repos-0:40- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  22.6 MiB/s |  23.2 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.14.5-2.f 100% |  59.1 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   2.3 MiB/s | 212.4 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-20 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 17/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.8 KiB |  00m00s
[ 18/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[ 19/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[ 20/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 21/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 22/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[ 23/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[ 24/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 25/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 26/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[ 27/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 28/154] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[ 29/154] Installing pkgconf-m4-0:1.9.5 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 30/154] Installing ncurses-base-0:6.4 100% |  57.2 MiB/s | 351.6 KiB |  00m00s
[ 31/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 32/154] Installing ncurses-libs-0:6.4 100% | 157.8 MiB/s | 969.8 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 33/154] Installing glibc-0:2.38.9000- 100% | 182.3 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 34/154] Installing bash-0:5.2.26-2.fc 100% | 326.5 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-2.fc40.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-2.fc40.x86_64
[ 35/154] Installing glibc-common-0:2.3 100% | 170.2 MiB/s |   1.0 MiB |  00m00s
[ 36/154] Installing glibc-gconv-extra- 100% | 174.7 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
[ 37/154] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB |  00m00s
[ 38/154] Installing xz-libs-0:5.4.6-1. 100% | 206.0 MiB/s | 210.9 KiB |  00m00s
[ 39/154] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 40/154] Installing libuuid-0:2.39.3-4 100% |   0.0   B/s |  38.8 KiB |  00m00s
[ 41/154] Installing readline-0:8.2-8.f 100% | 239.9 MiB/s | 491.4 KiB |  00m00s
[ 42/154] Installing libzstd-0:1.5.5-5. 100% | 377.5 MiB/s | 773.2 KiB |  00m00s
[ 43/154] Installing elfutils-libelf-0: 100% | 328.5 MiB/s |   1.0 MiB |  00m00s
[ 44/154] Installing popt-0:1.19-6.fc40 100% |  46.7 MiB/s | 143.5 KiB |  00m00s
[ 45/154] Installing libstdc++-0:14.0.1 100% | 306.9 MiB/s |   2.8 MiB |  00m00s
[ 46/154] Installing libblkid-0:2.39.3- 100% | 224.7 MiB/s | 230.1 KiB |  00m00s
[ 47/154] Installing libattr-0:2.5.2-3. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 48/154] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  40.8 KiB |  00m00s
[ 49/154] Installing libxcrypt-0:4.4.36 100% | 129.7 MiB/s | 265.5 KiB |  00m00s
[ 50/154] Installing gmp-1:6.2.1-8.fc40 100% | 259.4 MiB/s | 796.8 KiB |  00m00s
[ 51/154] Installing lz4-libs-0:1.9.4-6 100% | 127.4 MiB/s | 130.5 KiB |  00m00s
[ 52/154] Installing libeconf-0:0.5.2-3 100% |  52.4 MiB/s |  53.7 KiB |  00m00s
[ 53/154] Installing gdbm-libs-1:1.23-6 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 54/154] Installing mpfr-0:4.2.1-3.fc4 100% | 271.3 MiB/s | 833.5 KiB |  00m00s
[ 55/154] Installing gawk-0:5.3.0-3.fc4 100% | 216.0 MiB/s |   1.7 MiB |  00m00s
[ 56/154] Installing dwz-0:0.15-5.fc40. 100% | 285.5 MiB/s | 292.3 KiB |  00m00s
[ 57/154] Installing unzip-0:6.0-63.fc4 100% | 188.6 MiB/s | 386.3 KiB |  00m00s
[ 58/154] Installing file-libs-0:5.45-3 100% | 584.1 MiB/s |   9.9 MiB |  00m00s
[ 59/154] Installing file-0:5.45-3.fc40 100% | 102.6 MiB/s | 105.0 KiB |  00m00s
[ 60/154] Installing libcap-ng-0:0.8.4- 100% |  73.2 MiB/s |  75.0 KiB |  00m00s
[ 61/154] Installing audit-libs-0:4.0-7 100% | 153.0 MiB/s | 313.4 KiB |  00m00s
[ 62/154] Installing pam-libs-0:1.6.0-1 100% | 134.1 MiB/s | 137.3 KiB |  00m00s
[ 63/154] Installing libcap-0:2.69-3.fc 100% | 108.3 MiB/s | 221.9 KiB |  00m00s
[ 64/154] Installing systemd-libs-0:255 100% | 241.3 MiB/s |   1.9 MiB |  00m00s
[ 65/154] Installing libsmartcols-0:2.3 100% | 142.0 MiB/s | 145.4 KiB |  00m00s
[ 66/154] Installing lua-libs-0:5.4.6-5 100% | 275.7 MiB/s | 282.3 KiB |  00m00s
[ 67/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 68/154] Installing libsepol-0:3.6-3.f 100% | 261.4 MiB/s | 803.0 KiB |  00m00s
[ 69/154] Installing pcre2-0:10.42-2.fc 100% | 312.0 MiB/s | 639.1 KiB |  00m00s
[ 70/154] Installing libselinux-0:3.6-4 100% | 170.2 MiB/s | 174.3 KiB |  00m00s
[ 71/154] Installing sed-0:4.8-15.fc40. 100% | 157.4 MiB/s | 806.0 KiB |  00m00s
[ 72/154] Installing grep-0:3.11-7.fc40 100% | 167.2 MiB/s |   1.0 MiB |  00m00s
[ 73/154] Installing findutils-1:4.9.0- 100% | 209.4 MiB/s |   1.5 MiB |  00m00s
[ 74/154] Installing xz-0:5.4.6-1.fc40. 100% | 200.3 MiB/s |   2.0 MiB |  00m00s
[ 75/154] Installing libmount-0:2.39.3- 100% | 172.5 MiB/s | 353.3 KiB |  00m00s
[ 76/154] Installing alternatives-0:1.2 100% |  62.5 MiB/s |  64.0 KiB |  00m00s
[ 77/154] Installing jansson-0:2.13.1-9 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 78/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 79/154] Installing libunistring-0:1.1 100% | 346.1 MiB/s |   1.7 MiB |  00m00s
[ 80/154] Installing libidn2-0:2.3.7-1. 100% | 109.1 MiB/s | 335.0 KiB |  00m00s
[ 81/154] Installing libpsl-0:0.21.5-3. 100% |  79.7 MiB/s |  81.6 KiB |  00m00s
[ 82/154] Installing util-linux-core-0: 100% | 196.4 MiB/s |   1.4 MiB |  00m00s
[ 83/154] Installing tar-2:1.35-3.fc40. 100% | 295.1 MiB/s |   3.0 MiB |  00m00s
[ 84/154] Installing libsemanage-0:3.6- 100% | 144.2 MiB/s | 295.3 KiB |  00m00s
[ 85/154] Installing shadow-utils-2:4.1 100% | 106.1 MiB/s |   4.0 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
[ 86/154] Installing libutempter-0:1.2. 100% |  58.3 MiB/s |  59.7 KiB |  00m00s
[ 87/154] Installing zip-0:3.0-40.fc40. 100% | 230.2 MiB/s | 707.1 KiB |  00m00s
[ 88/154] Installing gdbm-1:1.23-6.fc40 100% | 151.6 MiB/s | 465.8 KiB |  00m00s
[ 89/154] Installing cyrus-sasl-lib-0:2 100% | 285.4 MiB/s |   2.3 MiB |  00m00s
[ 90/154] Installing zstd-0:1.5.5-5.fc4 100% | 329.3 MiB/s |   1.6 MiB |  00m00s
[ 91/154] Installing libfdisk-0:2.39.3- 100% | 177.7 MiB/s | 364.0 KiB |  00m00s
[ 92/154] Installing bzip2-0:1.0.8-18.f 100% |  93.9 MiB/s |  96.2 KiB |  00m00s
[ 93/154] Installing libxml2-0:2.12.4-3 100% | 283.3 MiB/s |   1.7 MiB |  00m00s
[ 94/154] Installing sqlite-libs-0:3.45 100% | 280.3 MiB/s |   1.4 MiB |  00m00s
[ 95/154] Installing ed-0:1.20-2.fc40.x 100% | 145.2 MiB/s | 148.7 KiB |  00m00s
[ 96/154] Installing patch-0:2.7.6-24.f 100% | 129.0 MiB/s | 264.3 KiB |  00m00s
[ 97/154] Installing elfutils-default-y 100% | 227.0 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc40.noar
[ 98/154] Installing cpio-0:2.15-1.fc40 100% | 183.3 MiB/s |   1.1 MiB |  00m00s
[ 99/154] Installing diffutils-0:3.10-5 100% | 226.6 MiB/s |   1.6 MiB |  00m00s
[100/154] Installing libgomp-0:14.0.1-0 100% | 253.5 MiB/s | 519.1 KiB |  00m00s
[101/154] Installing libpkgconf-0:1.9.5 100% |  73.5 MiB/s |  75.2 KiB |  00m00s
[102/154] Installing pkgconf-0:1.9.5-4. 100% |  80.4 MiB/s |  82.3 KiB |  00m00s
[103/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[104/154] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[105/154] Installing libverto-0:0.3.2-8 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[106/154] Installing libffi-0:3.4.4-7.f 100% |  81.0 MiB/s |  83.0 KiB |  00m00s
[107/154] Installing p11-kit-0:0.25.3-1 100% | 219.0 MiB/s |   2.4 MiB |  00m00s
[108/154] Installing p11-kit-trust-0:0. 100% |  37.5 MiB/s | 461.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
[109/154] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[110/154] Installing libbrotli-0:1.1.0- 100% | 203.1 MiB/s | 831.8 KiB |  00m00s
[111/154] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB |  00m00s
[112/154] Installing coreutils-common-0 100% | 327.5 MiB/s |  11.5 MiB |  00m00s
[113/154] Installing openssl-libs-1:3.1 100% | 365.2 MiB/s |   7.3 MiB |  00m00s
[114/154] Installing coreutils-0:9.4-5. 100% | 200.4 MiB/s |   5.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar
[115/154] Installing ca-certificates-0: 100% |   2.0 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa
[116/154] Installing krb5-libs-0:1.21.2 100% | 229.4 MiB/s |   2.3 MiB |  00m00s
[117/154] Installing libtirpc-0:1.3.4-1 100% | 199.8 MiB/s | 204.6 KiB |  00m00s
[118/154] Installing gzip-0:1.12-8.fc40 100% | 122.9 MiB/s | 377.6 KiB |  00m00s
>>> Running pre-install scriptlet: authselect-libs-0:1.5.0-3.fc40.x86_64
>>> Stop pre-install scriptlet: authselect-libs-0:1.5.0-3.fc40.x86_64
[119/154] Installing authselect-libs-0: 100% | 139.9 MiB/s |   1.0 MiB |  00m00s
[120/154] Installing authselect-0:1.5.0 100% |  78.6 MiB/s | 160.9 KiB |  00m00s
[121/154] Installing cracklib-0:2.9.11- 100% |  61.1 MiB/s | 250.3 KiB |  00m00s
[122/154] Installing libpwquality-0:1.4 100% |  84.0 MiB/s | 430.1 KiB |  00m00s
[123/154] Installing libnsl2-0:2.0.1-1. 100% |  57.7 MiB/s |  59.0 KiB |  00m00s
[124/154] Installing pam-0:1.6.0-1.fc40 100% | 120.7 MiB/s |   1.8 MiB |  00m00s
[125/154] Installing libssh-0:0.10.6-4. 100% | 249.7 MiB/s | 511.4 KiB |  00m00s
[126/154] Installing rpm-sequoia-0:1.6. 100% | 318.5 MiB/s |   2.2 MiB |  00m00s
[127/154] Installing rpm-libs-0:4.19.1- 100% | 231.6 MiB/s | 711.6 KiB |  00m00s
[128/154] Installing libarchive-0:3.7.2 100% | 298.4 MiB/s | 916.6 KiB |  00m00s
[129/154] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.4 KiB |  00m00s
[130/154] Installing openldap-0:2.6.6-1 100% | 210.0 MiB/s | 645.3 KiB |  00m00s
[131/154] Installing libcurl-0:8.5.0-2. 100% | 250.6 MiB/s | 769.7 KiB |  00m00s
[132/154] Installing elfutils-libs-0:0. 100% | 209.6 MiB/s | 644.0 KiB |  00m00s
[133/154] Installing elfutils-debuginfo 100% |  65.3 MiB/s |  66.9 KiB |  00m00s
[134/154] Installing binutils-0:2.41-31 100% | 325.9 MiB/s |  26.4 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-31.fc40.x86_64
>>> Stop post-install scriptlet: binutils-0:2.41-31.fc40.x86_64
[135/154] Installing binutils-gold-0:2. 100% | 145.1 MiB/s |   2.0 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-31.fc40.x86_64
>>> Stop post-install scriptlet: binutils-gold-0:2.41-31.fc40.x86_64
[136/154] Installing elfutils-0:0.190-6 100% | 316.1 MiB/s |   2.5 MiB |  00m00s
[137/154] Installing gdb-minimal-0:14.1 100% | 350.6 MiB/s |  12.3 MiB |  00m00s
[138/154] Installing debugedit-0:5.0-14 100% | 197.0 MiB/s | 201.7 KiB |  00m00s
[139/154] Installing rpm-build-libs-0:4 100% | 190.6 MiB/s | 195.2 KiB |  00m00s
[140/154] Installing curl-0:8.5.0-2.fc4 100% |  55.6 MiB/s | 796.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.1-4.fc40.x86_64
[141/154] Installing rpm-0:4.19.1-4.fc4 100% | 126.1 MiB/s |   2.4 MiB |  00m00s
[142/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[143/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[144/154] Installing zig-srpm-macros-0: 100% |   1.6 MiB/s |   1.7 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |  55.1 MiB/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |   0.0   B/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |  60.2 MiB/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |  50.1 MiB/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  92.6 MiB/s | 189.6 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  88.8 MiB/s | 182.0 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.39. 100% | 169.2 MiB/s |   3.6 MiB |  00m00s
[153/154] Installing which-0:2.21-41.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
[154/154] Installing info-0:7.1-2.fc40. 100% | 317.2 KiB/s | 358.2 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
Warning: skipped PGP checks for 152 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-3.fc40.x86_64
ansible-srpm-macros-1-14.fc40.noarch
audit-libs-4.0-7.fc40.x86_64
authselect-1.5.0-3.fc40.x86_64
authselect-libs-1.5.0-3.fc40.x86_64
basesystem-11-20.fc40.noarch
bash-5.2.26-2.fc40.x86_64
binutils-2.41-31.fc40.x86_64
binutils-gold-2.41-31.fc40.x86_64
bzip2-1.0.8-18.fc40.x86_64
bzip2-libs-1.0.8-18.fc40.x86_64
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.4-5.fc40.x86_64
coreutils-common-9.4-5.fc40.x86_64
cpio-2.15-1.fc40.x86_64
cracklib-2.9.11-5.fc40.x86_64
crypto-policies-20231204-3.git1e3a2e4.fc40.noarch
curl-8.5.0-2.fc40.x86_64
cyrus-sasl-lib-2.1.28-19.fc40.x86_64
debugedit-5.0-14.fc40.x86_64
diffutils-3.10-5.fc40.x86_64
dwz-0.15-5.fc40.x86_64
ed-1.20-2.fc40.x86_64
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.190-6.fc40.x86_64
elfutils-debuginfod-client-0.190-6.fc40.x86_64
elfutils-default-yama-scope-0.190-6.fc40.noarch
elfutils-libelf-0.190-6.fc40.x86_64
elfutils-libs-0.190-6.fc40.x86_64
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.29.noarch
fedora-release-common-40-0.29.noarch
fedora-release-identity-basic-40-0.29.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-3.fc40.x86_64
file-libs-5.45-3.fc40.x86_64
filesystem-3.18-8.fc40.x86_64
findutils-4.9.0-8.fc40.x86_64
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.2.0-3.fc40.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.x86_64
gdb-minimal-14.1-8.fc40.x86_64
gdbm-1.23-6.fc40.x86_64
gdbm-libs-1.23-6.fc40.x86_64
ghc-srpm-macros-1.6.1-5.fc40.noarch
glibc-2.38.9000-35.fc40.x86_64
glibc-common-2.38.9000-35.fc40.x86_64
glibc-gconv-extra-2.38.9000-35.fc40.x86_64
glibc-minimal-langpack-2.38.9000-35.fc40.x86_64
gmp-6.2.1-8.fc40.x86_64
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.3.1-3.fc40.noarch
grep-3.11-7.fc40.x86_64
gzip-1.12-8.fc40.x86_64
info-7.1-2.fc40.x86_64
jansson-2.13.1-9.fc40.x86_64
kernel-srpm-macros-1.0-22.fc40.noarch
keyutils-libs-1.6.3-3.fc40.x86_64
krb5-libs-1.21.2-5.fc40.x86_64
libacl-2.3.2-1.fc40.x86_64
libarchive-3.7.2-3.fc40.x86_64
libattr-2.5.2-3.fc40.x86_64
libblkid-2.39.3-4.fc40.x86_64
libbrotli-1.1.0-3.fc40.x86_64
libcap-2.69-3.fc40.x86_64
libcap-ng-0.8.4-4.fc40.x86_64
libcom_err-1.47.0-4.fc40.x86_64
libcurl-8.5.0-2.fc40.x86_64
libeconf-0.5.2-3.fc40.x86_64
libevent-2.1.12-11.fc40.x86_64
libfdisk-2.39.3-4.fc40.x86_64
libffi-3.4.4-7.fc40.x86_64
libgcc-14.0.1-0.4.fc40.x86_64
libgomp-14.0.1-0.4.fc40.x86_64
libidn2-2.3.7-1.fc40.x86_64
libmount-2.39.3-4.fc40.x86_64
libnghttp2-1.59.0-2.fc40.x86_64
libnsl2-2.0.1-1.fc40.x86_64
libpkgconf-1.9.5-4.fc40.x86_64
libpsl-0.21.5-3.fc40.x86_64
libpwquality-1.4.5-9.fc40.x86_64
libselinux-3.6-4.fc40.x86_64
libsemanage-3.6-3.fc40.x86_64
libsepol-3.6-3.fc40.x86_64
libsmartcols-2.39.3-4.fc40.x86_64
libssh-0.10.6-4.fc40.x86_64
libssh-config-0.10.6-4.fc40.noarch
libstdc++-14.0.1-0.4.fc40.x86_64
libtasn1-4.19.0-6.fc40.x86_64
libtirpc-1.3.4-1.rc2.fc40.2.x86_64
libunistring-1.1-7.fc40.x86_64
libutempter-1.2.1-13.fc40.x86_64
libuuid-2.39.3-4.fc40.x86_64
libverto-0.3.2-8.fc40.x86_64
libxcrypt-4.4.36-5.fc40.x86_64
libxml2-2.12.4-3.fc40.x86_64
libzstd-1.5.5-5.fc40.x86_64
lua-libs-5.4.6-5.fc40.x86_64
lua-srpm-macros-1-11.fc40.noarch
lz4-libs-1.9.4-6.fc40.x86_64
mpfr-4.2.1-3.fc40.x86_64
ncurses-base-6.4-11.20240113.fc40.noarch
ncurses-libs-6.4-11.20240113.fc40.x86_64
ocaml-srpm-macros-9-3.fc40.noarch
openblas-srpm-macros-2-16.fc40.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.4-4.fc40.x86_64
p11-kit-0.25.3-1.fc40.x86_64
p11-kit-trust-0.25.3-1.fc40.x86_64
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.0-1.fc40.x86_64
pam-libs-1.6.0-1.fc40.x86_64
patch-2.7.6-24.fc40.x86_64
pcre2-10.42-2.fc40.2.x86_64
pcre2-syntax-10.42-2.fc40.2.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-1.9.5-4.fc40.x86_64
pkgconf-m4-1.9.5-4.fc40.noarch
pkgconf-pkg-config-1.9.5-4.fc40.x86_64
popt-1.19-6.fc40.x86_64
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.12-3.fc40.noarch
qt6-srpm-macros-6.6.1-5.fc40.noarch
readline-8.2-8.fc40.x86_64
redhat-rpm-config-280-1.fc40.noarch
rpm-4.19.1-4.fc40.x86_64
rpm-build-4.19.1-4.fc40.x86_64
rpm-build-libs-4.19.1-4.fc40.x86_64
rpm-libs-4.19.1-4.fc40.x86_64
rpm-sequoia-1.6.0-2.fc40.x86_64
rust-srpm-macros-25.2-3.fc40.noarch
sed-4.8-15.fc40.x86_64
setup-2.14.5-2.fc40.noarch
shadow-utils-4.14.0-4.fc40.x86_64
sqlite-libs-3.45.0-2.fc40.x86_64
systemd-libs-255.3-1.fc40.x86_64
tar-1.35-3.fc40.x86_64
unzip-6.0-63.fc40.x86_64
util-linux-2.39.3-4.fc40.x86_64
util-linux-core-2.39.3-4.fc40.x86_64
which-2.21-41.fc40.x86_64
xxhash-libs-0.8.2-2.fc40.x86_64
xz-5.4.6-1.fc40.x86_64
xz-libs-5.4.6-1.fc40.x86_64
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.x86_64
zlib-ng-compat-2.1.6-2.fc40.x86_64
zstd-1.5.5-5.fc40.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706486400
Wrote: /builddir/build/SRPMS/seqan2-2.4.0-22.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706587000.260269/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vuxybd56/seqan2/seqan2.spec) Config(child) 1 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/seqan2-2.4.0-22.fc40.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706587000.260269/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706587000.260269/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706587000.260269/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-3.fc40.x86_64
  dnf5-plugins-5.1.11-3.fc40.x86_64
Finish: chroot init
Start: build phase for seqan2-2.4.0-22.fc40.src.rpm
Start: build setup for seqan2-2.4.0-22.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706486400
Wrote: /builddir/build/SRPMS/seqan2-2.4.0-22.fc40.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  27.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  79.3 KiB/s |   4.1 KiB |  00m00s
 fedora                                 100% | 759.1 KiB/s |  22.0 KiB |  00m00s
Repositories loaded.
Package                     Arch   Version                 Repository                                                         Size
Installing:                                                                                                                       
 boost-devel                x86_64 1.83.0-2.fc40           copr_base                                                     143.0 MiB
 bzip2-devel                x86_64 1.0.8-18.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB
 cmake                      x86_64 3.27.7-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.6 MiB
 gcc-c++                    x86_64 14.0.1-0.4.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.9 MiB
 libstdc++-static           x86_64 14.0.1-0.4.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 MiB
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Installing dependencies:                                                                                                          
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 boost-chrono               x86_64 1.83.0-2.fc40           copr_base                                                      37.6 KiB
 boost-container            x86_64 1.83.0-2.fc40           copr_base                                                      65.5 KiB
 boost-context              x86_64 1.83.0-2.fc40           copr_base                                                      16.5 KiB
 boost-contract             x86_64 1.83.0-2.fc40           copr_base                                                     103.2 KiB
 boost-coroutine            x86_64 1.83.0-2.fc40           copr_base                                                      21.1 KiB
 boost-date-time            x86_64 1.83.0-2.fc40           copr_base                                                      16.3 KiB
 boost-fiber                x86_64 1.83.0-2.fc40           copr_base                                                      82.8 KiB
 boost-filesystem           x86_64 1.83.0-2.fc40           copr_base                                                     147.6 KiB
 boost-graph                x86_64 1.83.0-2.fc40           copr_base                                                     342.4 KiB
 boost-iostreams            x86_64 1.83.0-2.fc40           copr_base                                                      94.7 KiB
 boost-json                 x86_64 1.83.0-2.fc40           copr_base                                                     325.2 KiB
 boost-locale               x86_64 1.83.0-2.fc40           copr_base                                                     606.2 KiB
 boost-log                  x86_64 1.83.0-2.fc40           copr_base                                                       1.5 MiB
 boost-math                 x86_64 1.83.0-2.fc40           copr_base                                                     647.0 KiB
 boost-nowide               x86_64 1.83.0-2.fc40           copr_base                                                      24.9 KiB
 boost-numpy3               x86_64 1.83.0-2.fc40           copr_base                                                      57.6 KiB
 boost-program-options      x86_64 1.83.0-2.fc40           copr_base                                                     272.7 KiB
 boost-python3              x86_64 1.83.0-2.fc40           copr_base                                                     250.4 KiB
 boost-random               x86_64 1.83.0-2.fc40           copr_base                                                      29.7 KiB
 boost-regex                x86_64 1.83.0-2.fc40           copr_base                                                     271.0 KiB
 boost-serialization        x86_64 1.83.0-2.fc40           copr_base                                                     437.6 KiB
 boost-stacktrace           x86_64 1.83.0-2.fc40           copr_base                                                      64.1 KiB
 boost-system               x86_64 1.83.0-2.fc40           copr_base                                                      16.3 KiB
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 boost-timer                x86_64 1.83.0-2.fc40           copr_base                                                      25.1 KiB
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 graphite2                  x86_64 1.3.14-15.fc40          copr_base                                                     192.0 KiB
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 mesa-libGLU-devel          x86_64 9.0.3-4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.0 KiB
 mesa-libgbm                x86_64 24.0.0~rc2-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.9 KiB
 mesa-libglapi              x86_64 24.0.0~rc2-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.5 KiB
 mpdecimal                  x86_64 2.5.1-9.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.9 KiB
 ncurses-c++-libs           x86_64 6.4-11.20240113.fc40    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 161.7 KiB
 ncurses-devel              x86_64 6.4-11.20240113.fc40    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.5 KiB
 nettle                     x86_64 3.9.1-6.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 790.1 KiB
 openblas                   x86_64 0.3.26-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp            x86_64 0.3.26-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.3 MiB
 pcre2-devel                x86_64 10.42-2.fc40.2          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 pcre2-utf16                x86_64 10.42-2.fc40.2          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 570.2 KiB
 pcre2-utf32                x86_64 10.42-2.fc40.2          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 542.1 KiB
 pixman                     x86_64 0.43.0-3.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 714.1 KiB
 pyproject-rpm-macros       noarch 1.12.0-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.8 KiB
 python-pip-wheel           noarch 23.3.2-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python-rpm-macros          noarch 3.12-7.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 python3                    x86_64 3.12.1-4.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.9 KiB
 python3-libs               x86_64 3.12.1-4.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.0 MiB
 python3-numpy              x86_64 1:1.26.2-4.fc40         copr_base                                                      44.0 MiB
 python3-packaging          noarch 23.2-4.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.1 KiB
 python3-rpm-generators     noarch 14-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.7 KiB
 python3-rpm-macros         noarch 3.12-7.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 KiB
 qt                         x86_64 1:4.8.7-76.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.5 MiB
 qt-common                  noarch 1:4.8.7-76.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 qt-settings                noarch 39.1-5.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 qt-x11                     x86_64 1:4.8.7-76.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.6 MiB
 rhash                      x86_64 1.4.3-4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 344.7 KiB
 sysprof-capture-devel      x86_64 45.1-2.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 252.7 KiB
 tzdata                     noarch 2023d-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 vim-filesystem             noarch 2:9.1.031-2.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 xml-common                 noarch 0.6.3-63.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xorg-x11-proto-devel       noarch 2023.2-4.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 xz-devel                   x86_64 5.4.6-1.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB

Transaction Summary:
 Installing:      201 packages

Total size of inbound packages is 286 MiB. Need to download 286 MiB.
After this operation 1 GiB will be used (install 1 GiB, remove 0 B).
[  1/201] boost-devel-0:1.83.0-2.fc40.x 100% |  56.0 MiB/s |  11.8 MiB |  00m00s
[  2/201] bzip2-devel-0:1.0.8-18.fc40.x 100% | 574.0 KiB/s | 213.5 KiB |  00m00s
[  3/201] gcc-c++-0:14.0.1-0.4.fc40.x86 100% |  57.7 MiB/s |  14.1 MiB |  00m00s
[  4/201] llvm-devel-0:17.0.6-5.fc40.x8 100% |  49.6 MiB/s |   3.6 MiB |  00m00s
[  5/201] cmake-0:3.27.7-1.fc40.x86_64  100% |  14.7 MiB/s |   8.0 MiB |  00m01s
[  6/201] libstdc++-static-0:14.0.1-0.4 100% |   5.2 MiB/s | 915.2 KiB |  00m00s
[  7/201] python3-devel-0:3.12.1-4.fc40 100% |   9.6 MiB/s | 273.9 KiB |  00m00s
[  8/201] zlib-ng-compat-devel-0:2.1.6- 100% |   1.7 MiB/s |  36.1 KiB |  00m00s
[  9/201] make-1:4.4.1-6.fc40.x86_64    100% |   7.7 MiB/s | 580.0 KiB |  00m00s
[ 10/201] libstdc++-devel-0:14.0.1-0.4. 100% |  18.9 MiB/s |   2.6 MiB |  00m00s
[ 11/201] qt-devel-1:4.8.7-76.fc40.x86_ 100% |  35.4 MiB/s |   9.8 MiB |  00m00s
[ 12/201] llvm-googletest-0:17.0.6-5.fc 100% |  12.1 MiB/s | 345.9 KiB |  00m00s
[ 13/201] llvm-libs-0:17.0.6-5.fc40.x86 100% |  64.4 MiB/s |  26.5 MiB |  00m00s
[ 14/201] llvm-0:17.0.6-5.fc40.x86_64   100% |  23.7 MiB/s |  24.8 MiB |  00m01s
[ 15/201] llvm-static-0:17.0.6-5.fc40.x 100% |  61.3 MiB/s |  34.6 MiB |  00m01s
[ 16/201] python3-0:3.12.1-4.fc40.x86_6 100% |   1.2 MiB/s |  26.8 KiB |  00m00s
[ 17/201] llvm-test-0:17.0.6-5.fc40.x86 100% |   8.6 MiB/s | 625.0 KiB |  00m00s
[ 18/201] qt-1:4.8.7-76.fc40.x86_64     100% |  48.9 MiB/s |   4.7 MiB |  00m00s
[ 19/201] cpp-0:14.0.1-0.4.fc40.x86_64  100% |  56.9 MiB/s |  11.9 MiB |  00m00s
[ 20/201] python3-libs-0:3.12.1-4.fc40. 100% |  26.0 MiB/s |   8.8 MiB |  00m00s
[ 21/201] qt-common-1:4.8.7-76.fc40.noa 100% | 291.9 KiB/s |   7.3 KiB |  00m00s
[ 22/201] libquadmath-devel-0:14.0.1-0. 100% | 953.6 KiB/s |  23.8 KiB |  00m00s
[ 23/201] libquadmath-0:14.0.1-0.4.fc40 100% |   7.8 MiB/s | 184.1 KiB |  00m00s
[ 24/201] alsa-lib-0:1.2.11-2.fc40.x86_ 100% |  13.5 MiB/s | 499.2 KiB |  00m00s
[ 25/201] fontconfig-0:2.15.0-3.fc40.x8 100% |  10.4 MiB/s | 256.5 KiB |  00m00s
[ 26/201] freetype-0:2.13.2-1.fc40.x86_ 100% |  11.7 MiB/s | 408.1 KiB |  00m00s
[ 27/201] qt-x11-1:4.8.7-76.fc40.x86_64 100% |  63.5 MiB/s |  13.2 MiB |  00m00s
[ 28/201] libICE-0:1.1.1-3.fc40.x86_64  100% |   3.0 MiB/s |  74.5 KiB |  00m00s
[ 29/201] libICE-devel-0:1.1.1-3.fc40.x 100% |   2.1 MiB/s |  45.9 KiB |  00m00s
[ 30/201] glib2-0:2.79.1-1.fc40.x86_64  100% |  25.4 MiB/s |   3.0 MiB |  00m00s
[ 31/201] libSM-0:1.2.4-3.fc40.x86_64   100% |   2.0 MiB/s |  43.0 KiB |  00m00s
[ 32/201] libSM-devel-0:1.2.4-3.fc40.x8 100% | 592.6 KiB/s |  11.9 KiB |  00m00s
[ 33/201] libX11-common-0:1.8.7-3.fc40. 100% |   7.0 MiB/s | 144.4 KiB |  00m00s
[ 34/201] libX11-0:1.8.7-3.fc40.x86_64  100% |  17.1 MiB/s | 648.3 KiB |  00m00s
[ 35/201] libX11-xcb-0:1.8.7-3.fc40.x86 100% | 559.8 KiB/s |  11.8 KiB |  00m00s
[ 36/201] libX11-devel-0:1.8.7-3.fc40.x 100% |  21.7 MiB/s | 911.8 KiB |  00m00s
[ 37/201] libXcursor-0:1.2.1-7.fc40.x86 100% |   1.3 MiB/s |  30.2 KiB |  00m00s
[ 38/201] libXcursor-devel-0:1.2.1-7.fc 100% |   1.4 MiB/s |  29.0 KiB |  00m00s
[ 39/201] libXext-0:1.3.5-6.fc40.x86_64 100% |   2.1 MiB/s |  38.9 KiB |  00m00s
[ 40/201] libXext-devel-0:1.3.5-6.fc40. 100% |   3.5 MiB/s |  72.2 KiB |  00m00s
[ 41/201] libXfixes-0:6.0.1-3.fc40.x86_ 100% | 949.2 KiB/s |  19.0 KiB |  00m00s
[ 42/201] libXfixes-devel-0:6.0.1-3.fc4 100% | 596.1 KiB/s |  12.5 KiB |  00m00s
[ 43/201] libXi-0:1.8.1-5.fc40.x86_64   100% |   1.9 MiB/s |  39.7 KiB |  00m00s
[ 44/201] libXi-devel-0:1.8.1-5.fc40.x8 100% |   4.8 MiB/s | 103.1 KiB |  00m00s
[ 45/201] libXinerama-0:1.1.5-6.fc40.x8 100% | 713.5 KiB/s |  14.3 KiB |  00m00s
[ 46/201] libXinerama-devel-0:1.1.5-6.f 100% | 688.2 KiB/s |  13.1 KiB |  00m00s
[ 47/201] libXrandr-0:1.5.4-3.fc40.x86_ 100% |   1.3 MiB/s |  27.5 KiB |  00m00s
[ 48/201] libXrandr-devel-0:1.5.4-3.fc4 100% | 959.7 KiB/s |  19.2 KiB |  00m00s
[ 49/201] libXrender-0:0.9.11-6.fc40.x8 100% |   1.5 MiB/s |  27.4 KiB |  00m00s
[ 50/201] libXrender-devel-0:0.9.11-6.f 100% | 947.7 KiB/s |  19.0 KiB |  00m00s
[ 51/201] libglvnd-glx-1:1.7.0-4.fc40.x 100% |   5.6 MiB/s | 132.4 KiB |  00m00s
[ 52/201] libglvnd-1:1.7.0-4.fc40.x86_6 100% |   5.3 MiB/s | 114.5 KiB |  00m00s
[ 53/201] libglvnd-devel-1:1.7.0-4.fc40 100% |   7.3 MiB/s | 157.2 KiB |  00m00s
[ 54/201] libglvnd-core-devel-1:1.7.0-4 100% | 868.9 KiB/s |  17.4 KiB |  00m00s
[ 55/201] libglvnd-egl-1:1.7.0-4.fc40.x 100% |   1.8 MiB/s |  35.4 KiB |  00m00s
[ 56/201] libglvnd-gles-1:1.7.0-4.fc40. 100% |   1.4 MiB/s |  29.2 KiB |  00m00s
[ 57/201] libglvnd-opengl-1:1.7.0-4.fc4 100% |   1.8 MiB/s |  38.0 KiB |  00m00s
[ 58/201] libjpeg-turbo-0:2.1.4-6.fc40. 100% |   8.1 MiB/s | 183.0 KiB |  00m00s
[ 59/201] libmng-0:2.0.3-21.fc40.x86_64 100% |   7.3 MiB/s | 186.6 KiB |  00m00s
[ 60/201] libpng-2:1.6.40-3.fc40.x86_64 100% |   6.2 MiB/s | 119.9 KiB |  00m00s
[ 61/201] libXft-devel-0:2.3.8-6.fc40.x 100% |   1.8 MiB/s |  36.3 KiB |  00m00s
[ 62/201] libtiff-0:4.6.0-2.fc40.x86_64 100% |  11.2 MiB/s | 332.4 KiB |  00m00s
[ 63/201] libXft-0:2.3.8-6.fc40.x86_64  100% |   3.7 MiB/s |  72.1 KiB |  00m00s
[ 64/201] fontconfig-devel-0:2.15.0-3.f 100% |   6.0 MiB/s | 128.7 KiB |  00m00s
[ 65/201] gcc-0:14.0.1-0.4.fc40.x86_64  100% |  16.1 MiB/s |  36.7 MiB |  00m02s
[ 66/201] libXt-0:1.3.0-3.fc40.x86_64   100% |   3.9 MiB/s | 177.5 KiB |  00m00s
[ 67/201] libXt-devel-0:1.3.0-3.fc40.x8 100% |   7.4 MiB/s | 408.2 KiB |  00m00s
[ 68/201] libXv-0:1.0.12-3.fc40.x86_64  100% | 924.6 KiB/s |  18.5 KiB |  00m00s
[ 69/201] libXv-devel-0:1.0.12-3.fc40.x 100% |   1.8 MiB/s |  38.5 KiB |  00m00s
[ 70/201] mesa-libGLU-devel-0:9.0.3-4.f 100% | 399.2 KiB/s |  12.0 KiB |  00m00s
[ 71/201] xorg-x11-proto-devel-0:2023.2 100% |  12.8 MiB/s | 262.7 KiB |  00m00s
[ 72/201] mesa-libGLU-0:9.0.3-4.fc40.x8 100% |   6.6 MiB/s | 162.5 KiB |  00m00s
[ 73/201] qt-settings-0:39.1-5.fc40.noa 100% | 550.1 KiB/s |   9.9 KiB |  00m00s
[ 74/201] dbus-libs-1:1.14.10-3.fc40.x8 100% |   6.9 MiB/s | 156.3 KiB |  00m00s
[ 75/201] expat-0:2.5.0-5.fc40.x86_64   100% |   5.6 MiB/s | 109.8 KiB |  00m00s
[ 76/201] libb2-0:0.98.1-11.fc40.x86_64 100% |   1.2 MiB/s |  25.5 KiB |  00m00s
[ 77/201] mpdecimal-0:2.5.1-9.fc40.x86_ 100% |   4.1 MiB/s |  88.6 KiB |  00m00s
[ 78/201] python-pip-wheel-0:23.3.2-1.f 100% |  35.9 MiB/s |   1.5 MiB |  00m00s
[ 79/201] tzdata-0:2023d-3.fc40.noarch  100% |  11.1 MiB/s | 433.6 KiB |  00m00s
[ 80/201] gl-manpages-0:1.1-31.20190306 100% |  21.3 MiB/s |   1.0 MiB |  00m00s
[ 81/201] libedit-0:3.1-50.20230828cvs. 100% |   5.4 MiB/s | 105.0 KiB |  00m00s
[ 82/201] libedit-devel-0:3.1-50.202308 100% |   1.7 MiB/s |  40.3 KiB |  00m00s
[ 83/201] ncurses-devel-0:6.4-11.202401 100% |  20.1 MiB/s | 535.0 KiB |  00m00s
[ 84/201] ncurses-c++-libs-0:6.4-11.202 100% |   1.8 MiB/s |  38.1 KiB |  00m00s
[ 85/201] cmake-filesystem-0:3.27.7-1.f 100% | 909.6 KiB/s |  19.1 KiB |  00m00s
[ 86/201] jbigkit-libs-0:2.1-29.fc40.x8 100% |   2.6 MiB/s |  53.1 KiB |  00m00s
[ 87/201] liblerc-0:4.0.0-6.fc40.x86_64 100% |   8.9 MiB/s | 210.1 KiB |  00m00s
[ 88/201] libwebp-0:1.3.2-4.fc40.x86_64 100% |  12.7 MiB/s | 286.3 KiB |  00m00s
[ 89/201] lcms2-0:2.16-3.fc40.x86_64    100% |   8.0 MiB/s | 180.2 KiB |  00m00s
[ 90/201] mesa-libGL-0:24.0.0~rc2-5.fc4 100% |   7.8 MiB/s | 176.8 KiB |  00m00s
[ 91/201] mesa-libglapi-0:24.0.0~rc2-5. 100% |   2.4 MiB/s |  50.2 KiB |  00m00s
[ 92/201] mesa-libEGL-0:24.0.0~rc2-5.fc 100% |   6.1 MiB/s | 131.7 KiB |  00m00s
[ 93/201] mesa-libgbm-0:24.0.0~rc2-5.fc 100% |   2.1 MiB/s |  44.6 KiB |  00m00s
[ 94/201] freetype-devel-0:2.13.2-1.fc4 100% |  27.0 MiB/s | 912.7 KiB |  00m00s
[ 95/201] libpng-devel-2:1.6.40-3.fc40. 100% |   9.5 MiB/s | 290.6 KiB |  00m00s
[ 96/201] libxcb-0:1.16-4.fc40.x86_64   100% |  10.3 MiB/s | 233.0 KiB |  00m00s
[ 97/201] libxcb-devel-0:1.16-4.fc40.x8 100% |  21.4 MiB/s |   1.1 MiB |  00m00s
[ 98/201] libuuid-devel-0:2.39.3-4.fc40 100% |   1.0 MiB/s |  24.7 KiB |  00m00s
[ 99/201] gc-0:8.2.2-6.fc40.x86_64      100% |   5.1 MiB/s | 110.2 KiB |  00m00s
[100/201] gnutls-0:3.8.3-2.fc40.x86_64  100% |  32.1 MiB/s |   1.1 MiB |  00m00s
[101/201] libmpc-0:1.3.1-5.fc40.x86_64  100% |   2.9 MiB/s |  71.1 KiB |  00m00s
[102/201] glibc-devel-0:2.38.9000-35.fc 100% |   5.2 MiB/s | 107.1 KiB |  00m00s
[103/201] libxcrypt-devel-0:4.4.36-5.fc 100% |   1.4 MiB/s |  28.6 KiB |  00m00s
[104/201] brotli-devel-0:1.1.0-3.fc40.x 100% |   1.7 MiB/s |  33.8 KiB |  00m00s
[105/201] guile30-0:3.0.7-12.fc40.x86_6 100% |  24.0 MiB/s |   8.0 MiB |  00m00s
[106/201] brotli-0:1.1.0-3.fc40.x86_64  100% | 867.1 KiB/s |  19.9 KiB |  00m00s
[107/201] harfbuzz-icu-0:8.3.0-4.fc40.x 100% | 784.6 KiB/s |  16.5 KiB |  00m00s
[108/201] harfbuzz-devel-0:8.3.0-4.fc40 100% |  11.9 MiB/s | 413.4 KiB |  00m00s
[109/201] gettext-runtime-0:0.22-4.fc40 100% |   5.7 MiB/s | 110.6 KiB |  00m00s
[110/201] harfbuzz-0:8.3.0-4.fc40.x86_6 100% |  22.0 MiB/s |   1.0 MiB |  00m00s
[111/201] gettext-envsubst-0:0.22-4.fc4 100% |   1.9 MiB/s |  36.5 KiB |  00m00s
[112/201] gettext-libs-0:0.22-4.fc40.x8 100% |  14.6 MiB/s | 327.9 KiB |  00m00s
[113/201] gettext-0:0.22-4.fc40.x86_64  100% |  19.6 MiB/s |   1.0 MiB |  00m00s
[114/201] xz-devel-0:5.4.6-1.fc40.x86_6 100% |   2.6 MiB/s |  61.7 KiB |  00m00s
[115/201] libxml2-devel-0:2.12.4-3.fc40 100% |  16.1 MiB/s | 495.1 KiB |  00m00s
[116/201] default-fonts-core-sans-0:4.0 100% |   1.2 MiB/s |  25.0 KiB |  00m00s
[117/201] fonts-filesystem-1:2.0.5-14.f 100% | 429.2 KiB/s |   8.2 KiB |  00m00s
[118/201] xml-common-0:0.6.3-63.fc40.no 100% |   1.7 MiB/s |  31.0 KiB |  00m00s
[119/201] abattis-cantarell-vf-fonts-0: 100% |   6.2 MiB/s | 120.3 KiB |  00m00s
[120/201] google-noto-fonts-common-0:20 100% | 937.2 KiB/s |  16.9 KiB |  00m00s
[121/201] google-noto-sans-vf-fonts-0:2 100% |  14.6 MiB/s | 583.1 KiB |  00m00s
[122/201] jsoncpp-0:1.9.5-7.fc40.x86_64 100% |   4.4 MiB/s |  99.3 KiB |  00m00s
[123/201] cmake-data-0:3.27.7-1.fc40.no 100% |  43.5 MiB/s |   1.7 MiB |  00m00s
[124/201] boost-0:1.83.0-2.fc40.x86_64  100% |   1.8 MiB/s |  14.5 KiB |  00m00s
[125/201] rhash-0:1.4.3-4.fc40.x86_64   100% |   8.6 MiB/s | 193.7 KiB |  00m00s
[126/201] libuv-1:1.47.0-6.fc40.x86_64  100% |  10.2 MiB/s | 250.2 KiB |  00m00s
[127/201] boost-numpy3-0:1.83.0-2.fc40. 100% |   2.7 MiB/s |  30.2 KiB |  00m00s
[128/201] boost-atomic-0:1.83.0-2.fc40. 100% |   2.5 MiB/s |  20.4 KiB |  00m00s
[129/201] boost-chrono-0:1.83.0-2.fc40. 100% |   3.3 MiB/s |  26.7 KiB |  00m00s
[130/201] boost-container-0:1.83.0-2.fc 100% |   5.0 MiB/s |  40.9 KiB |  00m00s
[131/201] boost-context-0:1.83.0-2.fc40 100% |   2.1 MiB/s |  17.4 KiB |  00m00s
[132/201] boost-contract-0:1.83.0-2.fc4 100% |   4.6 MiB/s |  46.9 KiB |  00m00s
[133/201] libicu-devel-0:73.2-5.fc40.x8 100% |  16.6 MiB/s | 849.4 KiB |  00m00s
[134/201] boost-coroutine-0:1.83.0-2.fc 100% |   2.5 MiB/s |  20.8 KiB |  00m00s
[135/201] boost-date-time-0:1.83.0-2.fc 100% |   2.0 MiB/s |  16.2 KiB |  00m00s
[136/201] boost-fiber-0:1.83.0-2.fc40.x 100% |   5.3 MiB/s |  43.1 KiB |  00m00s
[137/201] boost-filesystem-0:1.83.0-2.f 100% |   7.6 MiB/s |  70.1 KiB |  00m00s
[138/201] boost-graph-0:1.83.0-2.fc40.x 100% |  16.6 MiB/s | 152.7 KiB |  00m00s
[139/201] boost-iostreams-0:1.83.0-2.fc 100% |   5.1 MiB/s |  42.1 KiB |  00m00s
[140/201] boost-json-0:1.83.0-2.fc40.x8 100% |  14.2 MiB/s | 145.3 KiB |  00m00s
[141/201] boost-locale-0:1.83.0-2.fc40. 100% |  17.5 MiB/s | 214.5 KiB |  00m00s
[142/201] boost-log-0:1.83.0-2.fc40.x86 100% |  34.3 MiB/s | 492.4 KiB |  00m00s
[143/201] boost-math-0:1.83.0-2.fc40.x8 100% |  17.6 MiB/s | 215.7 KiB |  00m00s
[144/201] boost-nowide-0:1.83.0-2.fc40. 100% |   2.6 MiB/s |  21.3 KiB |  00m00s
[145/201] boost-program-options-0:1.83. 100% |  12.0 MiB/s | 110.3 KiB |  00m00s
[146/201] boost-python3-0:1.83.0-2.fc40 100% |  10.5 MiB/s |  97.1 KiB |  00m00s
[147/201] boost-random-0:1.83.0-2.fc40. 100% |   3.0 MiB/s |  24.9 KiB |  00m00s
[148/201] boost-regex-0:1.83.0-2.fc40.x 100% |  12.2 MiB/s | 112.1 KiB |  00m00s
[149/201] boost-serialization-0:1.83.0- 100% |  13.2 MiB/s | 135.3 KiB |  00m00s
[150/201] boost-stacktrace-0:1.83.0-2.f 100% |   3.8 MiB/s |  31.0 KiB |  00m00s
[151/201] boost-system-0:1.83.0-2.fc40. 100% |   2.0 MiB/s |  16.2 KiB |  00m00s
[152/201] boost-test-0:1.83.0-2.fc40.x8 100% |  21.2 MiB/s | 239.3 KiB |  00m00s
[153/201] boost-thread-0:1.83.0-2.fc40. 100% |   6.8 MiB/s |  62.8 KiB |  00m00s
[154/201] boost-timer-0:1.83.0-2.fc40.x 100% |   2.4 MiB/s |  22.2 KiB |  00m00s
[155/201] boost-type_erasure-0:1.83.0-2 100% |   4.2 MiB/s |  34.5 KiB |  00m00s
[156/201] boost-wave-0:1.83.0-2.fc40.x8 100% |  20.4 MiB/s | 208.7 KiB |  00m00s
[157/201] libdrm-0:2.4.120-3.fc40.x86_6 100% |   6.4 MiB/s | 157.7 KiB |  00m00s
[158/201] libwayland-server-0:1.22.0-3. 100% |   1.9 MiB/s |  39.9 KiB |  00m00s
[159/201] libXxf86vm-0:1.1.5-6.fc40.x86 100% | 682.5 KiB/s |  17.7 KiB |  00m00s
[160/201] libxshmfence-0:1.3.2-3.fc40.x 100% | 572.1 KiB/s |  12.0 KiB |  00m00s
[161/201] libwayland-client-0:1.22.0-3. 100% |   1.5 MiB/s |  31.9 KiB |  00m00s
[162/201] libXau-devel-0:1.0.11-6.fc40. 100% | 682.9 KiB/s |  13.7 KiB |  00m00s
[163/201] libXau-0:1.0.11-6.fc40.x86_64 100% |   1.5 MiB/s |  31.7 KiB |  00m00s
[164/201] libpciaccess-0:0.16-12.fc40.x 100% |   1.4 MiB/s |  26.4 KiB |  00m00s
[165/201] graphite2-devel-0:1.3.14-15.f 100% |   2.6 MiB/s |  21.1 KiB |  00m00s
[166/201] libicu-0:73.2-5.fc40.x86_64   100% |  36.0 MiB/s |  10.5 MiB |  00m00s
[167/201] glib2-devel-0:2.79.1-1.fc40.x 100% |  23.8 MiB/s |   1.3 MiB |  00m00s
[168/201] cairo-0:1.18.0-3.fc40.x86_64  100% |  10.8 MiB/s | 708.9 KiB |  00m00s
[169/201] libffi-devel-0:3.4.4-7.fc40.x 100% |   1.0 MiB/s |  28.2 KiB |  00m00s
[170/201] libselinux-devel-0:3.6-4.fc40 100% |   4.7 MiB/s | 115.2 KiB |  00m00s
[171/201] pcre2-utf16-0:10.42-2.fc40.2. 100% |   9.6 MiB/s | 215.8 KiB |  00m00s
[172/201] pcre2-devel-0:10.42-2.fc40.2. 100% |  15.4 MiB/s | 472.9 KiB |  00m00s
[173/201] graphite2-0:1.3.14-15.fc40.x8 100% |  10.3 MiB/s |  95.3 KiB |  00m00s
[174/201] pcre2-utf32-0:10.42-2.fc40.2. 100% |   6.6 MiB/s | 203.2 KiB |  00m00s
[175/201] nettle-0:3.9.1-6.fc40.x86_64  100% |  14.8 MiB/s | 424.9 KiB |  00m00s
[176/201] glibc-headers-x86-0:2.38.9000 100% |  17.7 MiB/s | 524.2 KiB |  00m00s
[177/201] libmount-devel-0:2.39.3-4.fc4 100% | 969.0 KiB/s |  18.4 KiB |  00m00s
[178/201] python3-packaging-0:23.2-4.fc 100% |   5.6 MiB/s | 115.5 KiB |  00m00s
[179/201] sysprof-capture-devel-0:45.1- 100% |   2.4 MiB/s |  53.4 KiB |  00m00s
[180/201] emacs-filesystem-1:29.2-3.fc4 100% | 432.3 KiB/s |   7.8 KiB |  00m00s
[181/201] vim-filesystem-2:9.1.031-2.fc 100% | 966.6 KiB/s |  17.4 KiB |  00m00s
[182/201] pixman-0:0.43.0-3.fc40.x86_64 100% |  13.1 MiB/s | 295.8 KiB |  00m00s
[183/201] kernel-headers-0:6.8.0-0.rc1. 100% |  15.8 MiB/s |   1.4 MiB |  00m00s
[184/201] libsepol-devel-0:3.6-3.fc40.x 100% |   1.7 MiB/s |  40.2 KiB |  00m00s
[185/201] libblkid-devel-0:2.39.3-4.fc4 100% | 851.2 KiB/s |  17.9 KiB |  00m00s
[186/201] python3-numpy-1:1.26.2-4.fc40 100% |  81.0 MiB/s |   7.2 MiB |  00m00s
[187/201] flexiblas-0:3.4.1-3.fc40.x86_ 100% | 978.6 KiB/s |  25.4 KiB |  00m00s
[188/201] flexiblas-netlib-0:3.4.1-3.fc 100% |  46.7 MiB/s |   3.1 MiB |  00m00s
[189/201] flexiblas-openblas-openmp-0:3 100% |   2.2 MiB/s |  18.0 KiB |  00m00s
[190/201] libgfortran-0:14.0.1-0.4.fc40 100% |  20.9 MiB/s | 921.4 KiB |  00m00s
[191/201] openblas-0:0.3.26-1.fc40.x86_ 100% |   1.8 MiB/s |  38.4 KiB |  00m00s
[192/201] hwdata-0:0.378-3.fc40.noarch  100% |   9.1 MiB/s |   1.6 MiB |  00m00s
[193/201] gcc-plugin-annobin-0:14.0.1-0 100% |   1.7 MiB/s |  34.9 KiB |  00m00s
[194/201] pyproject-rpm-macros-0:1.12.0 100% |   2.0 MiB/s |  41.4 KiB |  00m00s
[195/201] python-rpm-macros-0:3.12-7.fc 100% | 900.6 KiB/s |  18.0 KiB |  00m00s
[196/201] openblas-openmp-0:0.3.26-1.fc 100% |  46.5 MiB/s |   5.0 MiB |  00m00s
[197/201] python3-rpm-generators-0:14-1 100% |   1.2 MiB/s |  29.6 KiB |  00m00s
[198/201] python3-rpm-macros-0:3.12-7.f 100% | 710.1 KiB/s |  12.8 KiB |  00m00s
[199/201] annobin-docs-0:12.38-1.fc40.n 100% |   4.4 MiB/s |  89.6 KiB |  00m00s
[200/201] cmake-rpm-macros-0:3.27.7-1.f 100% | 882.4 KiB/s |  18.5 KiB |  00m00s
[201/201] annobin-plugin-gcc-0:12.38-1. 100% |  26.0 MiB/s | 957.3 KiB |  00m00s
--------------------------------------------------------------------------------
[201/201] Total                         100% |  67.9 MiB/s | 286.3 MiB |  00m04s
Running transaction
[  1/203] Verify package files          100% | 213.0   B/s | 201.0   B |  00m01s
[  2/203] Prepare transaction           100% | 670.0   B/s | 201.0   B |  00m00s
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[  5/203] Installing boost-chrono-0:1.8 100% |  37.7 MiB/s |  38.6 KiB |  00m00s
[  6/203] Installing libicu-0:73.2-5.fc 100% | 343.7 MiB/s |  36.1 MiB |  00m00s
[  7/203] Installing boost-thread-0:1.8 100% | 134.5 MiB/s | 137.8 KiB |  00m00s
[  8/203] Installing expat-0:2.5.0-5.fc 100% | 131.3 MiB/s | 268.8 KiB |  00m00s
[  9/203] Installing libglvnd-1:1.7.0-4 100% | 259.6 MiB/s | 531.7 KiB |  00m00s
[ 10/203] Installing cmake-filesystem-0 100% |   7.1 MiB/s |   7.3 KiB |  00m00s
[ 11/203] Installing libpng-2:1.6.40-3. 100% | 237.4 MiB/s | 243.1 KiB |  00m00s
[ 12/203] Installing libICE-0:1.1.1-3.f 100% | 178.3 MiB/s | 182.6 KiB |  00m00s
[ 13/203] Installing zlib-ng-compat-dev 100% | 102.0 MiB/s | 104.5 KiB |  00m00s
[ 14/203] Installing libICE-devel-0:1.1 100% | 257.2 MiB/s | 263.4 KiB |  00m00s
[ 15/203] Installing libSM-0:1.2.4-3.fc 100% |  96.3 MiB/s |  98.6 KiB |  00m00s
[ 16/203] Installing boost-regex-0:1.83 100% | 265.6 MiB/s | 272.0 KiB |  00m00s
[ 17/203] Installing python-rpm-macros- 100% |   0.0   B/s |  22.8 KiB |  00m00s
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[ 20/203] Installing boost-filesystem-0 100% | 145.1 MiB/s | 148.6 KiB |  00m00s
[ 21/203] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[ 22/203] Installing libmpc-0:1.3.1-5.f 100% | 162.3 MiB/s | 166.2 KiB |  00m00s
[ 23/203] Installing libjpeg-turbo-0:2. 100% | 321.4 MiB/s | 658.2 KiB |  00m00s
[ 24/203] Installing libX11-xcb-0:1.8.7 100% |   0.0   B/s |  15.9 KiB |  00m00s
[ 25/203] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 26/203] Installing libglvnd-opengl-1: 100% |  73.1 MiB/s | 149.7 KiB |  00m00s
[ 27/203] Installing libicu-devel-0:73. 100% | 223.5 MiB/s |   5.6 MiB |  00m00s
[ 28/203] Installing libgfortran-0:14.0 100% | 294.3 MiB/s |   2.9 MiB |  00m00s
[ 29/203] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.2 KiB |  00m00s
[ 30/203] Installing libXau-0:1.0.11-6. 100% |  66.8 MiB/s |  68.4 KiB |  00m00s
[ 31/203] Installing libxcb-0:1.16-4.fc 100% | 186.0 MiB/s |   1.1 MiB |  00m00s
[ 32/203] Installing libxshmfence-0:1.3 100% |   0.0   B/s |  16.2 KiB |  00m00s
[ 33/203] Installing libwayland-server- 100% |  77.8 MiB/s |  79.7 KiB |  00m00s
[ 34/203] Installing boost-date-time-0: 100% |  16.9 MiB/s |  17.3 KiB |  00m00s
[ 35/203] Installing boost-container-0: 100% |  65.0 MiB/s |  66.5 KiB |  00m00s
[ 36/203] Installing gettext-libs-0:0.2 100% | 220.4 MiB/s | 902.9 KiB |  00m00s
[ 37/203] Installing mesa-libglapi-0:24 100% | 165.3 MiB/s | 169.3 KiB |  00m00s
[ 38/203] Installing libedit-0:3.1-50.2 100% | 239.8 MiB/s | 245.5 KiB |  00m00s
[ 39/203] Installing llvm-libs-0:17.0.6 100% | 396.2 MiB/s | 114.1 MiB |  00m00s
[ 40/203] Installing libquadmath-0:14.0 100% | 107.8 MiB/s | 331.2 KiB |  00m00s
[ 41/203] Installing libstdc++-devel-0: 100% | 288.2 MiB/s |  14.7 MiB |  00m00s
[ 42/203] Installing boost-json-0:1.83. 100% | 159.2 MiB/s | 326.0 KiB |  00m00s
[ 43/203] Installing boost-wave-0:1.83. 100% | 311.0 MiB/s | 636.9 KiB |  00m00s
[ 44/203] Installing libXau-devel-0:1.0 100% |   2.0 MiB/s |   8.2 KiB |  00m00s
[ 45/203] Installing libxcb-devel-0:1.1 100% |  54.6 MiB/s |   3.1 MiB |  00m00s
[ 46/203] Installing graphite2-devel-0: 100% |  49.4 MiB/s |  50.6 KiB |  00m00s
[ 47/203] Installing mesa-libGLU-0:9.0. 100% | 173.2 MiB/s | 354.6 KiB |  00m00s
[ 48/203] Installing pyproject-rpm-macr 100% |  98.4 MiB/s | 100.8 KiB |  00m00s
[ 49/203] Installing cpp-0:14.0.1-0.4.f 100% | 344.0 MiB/s |  34.7 MiB |  00m00s
[ 50/203] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB |  00m00s
[ 51/203] Installing boost-fiber-0:1.83 100% |  81.8 MiB/s |  83.7 KiB |  00m00s
[ 52/203] Installing boost-log-0:1.83.0 100% | 294.3 MiB/s |   1.5 MiB |  00m00s
[ 53/203] Installing boost-coroutine-0: 100% |  21.6 MiB/s |  22.2 KiB |  00m00s
[ 54/203] Installing boost-graph-0:1.83 100% | 167.7 MiB/s | 343.4 KiB |  00m00s
[ 55/203] Installing libpng-devel-2:1.6 100% | 288.2 MiB/s | 885.4 KiB |  00m00s
[ 56/203] Installing boost-locale-0:1.8 100% | 296.5 MiB/s | 607.2 KiB |  00m00s
[ 57/203] Installing boost-type_erasure 100% |  57.9 MiB/s |  59.3 KiB |  00m00s
[ 58/203] Installing boost-timer-0:1.83 100% |  25.5 MiB/s |  26.1 KiB |  00m00s
[ 59/203] Installing annobin-docs-0:12. 100% |  94.3 MiB/s |  96.6 KiB |  00m00s
[ 60/203] Installing openblas-0:0.3.26- 100% |  95.5 MiB/s |  97.8 KiB |  00m00s
[ 61/203] Installing openblas-openmp-0: 100% | 532.3 MiB/s |  38.3 MiB |  00m00s
[ 62/203] Installing flexiblas-0:3.4.1- 100% |  46.8 MiB/s |  47.9 KiB |  00m00s
[ 63/203] Installing flexiblas-openblas 100% |  39.2 MiB/s |  40.2 KiB |  00m00s
[ 64/203] Installing flexiblas-netlib-0 100% | 351.8 MiB/s |  10.2 MiB |  00m00s
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[ 66/203] Installing hwdata-0:0.378-3.f 100% | 473.7 MiB/s |   9.0 MiB |  00m00s
[ 67/203] Installing libpciaccess-0:0.1 100% |  44.9 MiB/s |  46.0 KiB |  00m00s
[ 68/203] Installing libdrm-0:2.4.120-3 100% | 132.1 MiB/s | 405.7 KiB |  00m00s
[ 69/203] Installing mesa-libgbm-0:24.0 100% |  64.2 MiB/s |  65.7 KiB |  00m00s
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[ 71/203] Installing pixman-0:0.43.0-3. 100% | 232.8 MiB/s | 715.2 KiB |  00m00s
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[ 73/203] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
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[ 78/203] Installing glibc-devel-0:2.38 100% |  39.9 MiB/s |  40.8 KiB |  00m00s
[ 79/203] Installing nettle-0:3.9.1-6.f 100% | 258.2 MiB/s | 793.3 KiB |  00m00s
[ 80/203] Installing gnutls-0:3.8.3-2.f 100% | 288.0 MiB/s |   3.2 MiB |  00m00s
[ 81/203] Installing glib2-0:2.79.1-1.f 100% | 319.1 MiB/s |  14.4 MiB |  00m00s
[ 82/203] Installing pcre2-utf32-0:10.4 100% | 265.1 MiB/s | 543.0 KiB |  00m00s
[ 83/203] Installing pcre2-utf16-0:10.4 100% | 185.9 MiB/s | 571.0 KiB |  00m00s
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[ 85/203] Installing libselinux-devel-0 100% |  31.4 MiB/s | 160.6 KiB |  00m00s
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[ 87/203] Installing libffi-devel-0:3.4 100% |  34.1 MiB/s |  34.9 KiB |  00m00s
[ 88/203] Installing libwayland-client- 100% |  57.9 MiB/s |  59.3 KiB |  00m00s
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[ 90/203] Installing mesa-libEGL-0:24.0 100% | 140.4 MiB/s | 287.6 KiB |  00m00s
[ 91/203] Installing libglvnd-gles-1:1. 100% | 105.0 MiB/s | 107.6 KiB |  00m00s
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[106/203] Installing default-fonts-core 100% |   2.5 MiB/s |  18.2 KiB |  00m00s
>>> Running pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
[107/203] Installing xml-common-0:0.6.3 100% |  79.2 MiB/s |  81.1 KiB |  00m00s
[108/203] Installing xz-devel-0:5.4.6-1 100% | 126.9 MiB/s | 259.9 KiB |  00m00s
[109/203] Installing libxml2-devel-0:2. 100% | 284.7 MiB/s |   3.4 MiB |  00m00s
[110/203] Installing gettext-envsubst-0 100% |  74.6 MiB/s |  76.3 KiB |  00m00s
[111/203] Installing gettext-runtime-0: 100% |  93.0 MiB/s | 476.3 KiB |  00m00s
[112/203] Installing gettext-0:0.22-4.f 100% | 279.9 MiB/s |   5.0 MiB |  00m00s
[113/203] Installing brotli-0:1.1.0-3.f 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[114/203] Installing brotli-devel-0:1.1 100% |  66.4 MiB/s |  68.0 KiB |  00m00s
[115/203] Installing gc-0:8.2.2-6.fc40. 100% |  85.0 MiB/s | 261.2 KiB |  00m00s
[116/203] Installing guile30-0:3.0.7-12 100% | 379.3 MiB/s |  51.6 MiB |  00m00s
[117/203] Installing make-1:4.4.1-6.fc4 100% | 225.0 MiB/s |   1.8 MiB |  00m00s
[118/203] Installing gcc-0:14.0.1-0.4.f 100% | 358.5 MiB/s | 103.2 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[119/203] Installing gcc-c++-0:14.0.1-0 100% | 344.4 MiB/s |  37.9 MiB |  00m00s
[120/203] Installing libquadmath-devel- 100% |   0.0   B/s |  23.1 KiB |  00m00s
[121/203] Installing libuuid-devel-0:2. 100% |  15.6 MiB/s |  15.9 KiB |  00m00s
[122/203] Installing libSM-devel-0:1.2. 100% |   0.0   B/s |  19.7 KiB |  00m00s
[123/203] Installing lcms2-0:2.16-3.fc4 100% | 206.3 MiB/s | 422.5 KiB |  00m00s
[124/203] Installing libmng-0:2.0.3-21. 100% | 261.9 MiB/s | 536.5 KiB |  00m00s
[125/203] Installing libwebp-0:1.3.2-4. 100% | 259.7 MiB/s | 797.7 KiB |  00m00s
[126/203] Installing liblerc-0:4.0.0-6. 100% | 295.4 MiB/s | 605.0 KiB |  00m00s
[127/203] Installing jbigkit-libs-0:2.1 100% | 116.8 MiB/s | 119.6 KiB |  00m00s
[128/203] Installing libtiff-0:4.6.0-2. 100% | 279.9 MiB/s |   1.1 MiB |  00m00s
[129/203] Installing ncurses-c++-libs-0 100% |  79.5 MiB/s | 162.9 KiB |  00m00s
[130/203] Installing ncurses-devel-0:6. 100% |  54.6 MiB/s |   1.0 MiB |  00m00s
[131/203] Installing libedit-devel-0:3. 100% |  21.7 MiB/s |  66.8 KiB |  00m00s
[132/203] Installing gl-manpages-0:1.1- 100% |  45.9 MiB/s |   1.1 MiB |  00m00s
[133/203] Installing tzdata-0:2023d-3.f 100% |  42.4 MiB/s |   1.9 MiB |  00m00s
[134/203] Installing python-pip-wheel-0 100% | 506.6 MiB/s |   1.5 MiB |  00m00s
[135/203] Installing mpdecimal-0:2.5.1- 100% | 197.3 MiB/s | 202.0 KiB |  00m00s
[136/203] Installing libb2-0:0.98.1-11. 100% |  10.6 MiB/s |  43.3 KiB |  00m00s
[137/203] Installing python3-libs-0:3.1 100% | 258.5 MiB/s |  41.4 MiB |  00m00s
[138/203] Installing python3-0:3.12.1-4 100% |  16.4 MiB/s |  33.6 KiB |  00m00s
[139/203] Installing llvm-0:17.0.6-5.fc 100% | 342.1 MiB/s | 113.6 MiB |  00m00s
[140/203] Installing boost-python3-0:1. 100% | 122.8 MiB/s | 251.5 KiB |  00m00s
[141/203] Installing python3-packaging- 100% | 105.4 MiB/s | 431.9 KiB |  00m00s
[142/203] Installing cmake-rpm-macros-0 100% |   1.0 MiB/s |   8.0 KiB |  00m00s
[143/203] Installing cmake-data-0:3.27. 100% |  91.9 MiB/s |   8.4 MiB |  00m00s
[144/203] Installing cmake-0:3.27.7-1.f 100% | 391.9 MiB/s |  30.6 MiB |  00m00s
[145/203] Installing glib2-devel-0:2.79 100% | 420.1 MiB/s |  15.1 MiB |  00m00s
[146/203] Installing python3-rpm-genera 100% |  81.0 MiB/s |  82.9 KiB |  00m00s
[147/203] Installing llvm-test-0:17.0.6 100% | 208.6 MiB/s |   1.9 MiB |  00m00s
[148/203] Installing python3-numpy-1:1. 100% | 318.6 MiB/s |  44.3 MiB |  00m00s
[149/203] Installing boost-numpy3-0:1.8 100% |  57.3 MiB/s |  58.6 KiB |  00m00s
[150/203] Installing boost-0:1.83.0-2.f 100% |   0.0   B/s |   1.7 KiB |  00m00s
[151/203] Installing qt-settings-0:39.1 100% |   0.0   B/s |   1.7 KiB |  00m00s
[152/203] Installing dbus-libs-1:1.14.1 100% | 180.7 MiB/s | 370.1 KiB |  00m00s
[153/203] Installing qt-common-1:4.8.7- 100% |  24.2 KiB/s | 124.0   B |  00m00s
>>> Running pre-install scriptlet: qt-1:4.8.7-76.fc40.x86_64
>>> Stop pre-install scriptlet: qt-1:4.8.7-76.fc40.x86_64
[154/203] Installing qt-1:4.8.7-76.fc40 100% | 302.7 MiB/s |  17.6 MiB |  00m00s
>>> Running post-install scriptlet: qt-1:4.8.7-76.fc40.x86_64
>>> Stop post-install scriptlet: qt-1:4.8.7-76.fc40.x86_64
[155/203] Installing libglvnd-core-deve 100% |  40.1 MiB/s |  41.1 KiB |  00m00s
[156/203] Installing libX11-common-0:1. 100% |  98.8 MiB/s |   1.2 MiB |  00m00s
[157/203] Installing libX11-0:1.8.7-3.f 100% | 212.3 MiB/s |   1.3 MiB |  00m00s
[158/203] Installing libX11-devel-0:1.8 100% |  58.9 MiB/s |   1.1 MiB |  00m00s
[159/203] Installing libXext-0:1.3.5-6. 100% |  89.2 MiB/s |  91.3 KiB |  00m00s
[160/203] Installing libXrender-0:0.9.1 100% |  50.2 MiB/s |  51.4 KiB |  00m00s
[161/203] Installing libXext-devel-0:1. 100% |  54.1 MiB/s | 110.8 KiB |  00m00s
[162/203] Installing libXrender-devel-0 100% |  49.8 MiB/s |  51.0 KiB |  00m00s
[163/203] Installing libXfixes-0:6.0.1- 100% |  30.9 MiB/s |  31.6 KiB |  00m00s
[164/203] Installing libXfixes-devel-0: 100% |   0.0   B/s |   9.9 KiB |  00m00s
[165/203] Installing libXcursor-0:1.2.1 100% |  50.0 MiB/s |  51.2 KiB |  00m00s
[166/203] Installing libXrandr-0:1.5.4- 100% |  51.9 MiB/s |  53.1 KiB |  00m00s
[167/203] Installing cairo-0:1.18.0-3.f 100% | 288.6 MiB/s |   1.7 MiB |  00m00s
[168/203] Installing harfbuzz-0:8.3.0-4 100% | 288.0 MiB/s |   2.6 MiB |  00m00s
[169/203] Installing freetype-0:2.13.2- 100% | 205.2 MiB/s | 840.3 KiB |  00m00s
[170/203] Installing fontconfig-0:2.15. 100% | 766.2 KiB/s | 786.1 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
[171/203] Installing libXi-0:1.8.1-5.fc 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[172/203] Installing libXinerama-0:1.1. 100% |   0.0   B/s |  20.2 KiB |  00m00s
[173/203] Installing libXinerama-devel- 100% |   8.3 MiB/s |   8.5 KiB |  00m00s
[174/203] Installing libXi-devel-0:1.8. 100% |  70.6 MiB/s | 144.6 KiB |  00m00s
[175/203] Installing libXft-0:2.3.8-6.f 100% | 162.1 MiB/s | 166.0 KiB |  00m00s
[176/203] Installing harfbuzz-icu-0:8.3 100% |  16.0 MiB/s |  16.3 KiB |  00m00s
[177/203] Installing libXrandr-devel-0: 100% |  24.1 MiB/s |  24.7 KiB |  00m00s
[178/203] Installing libXcursor-devel-0 100% |  15.9 MiB/s |  32.6 KiB |  00m00s
[179/203] Installing libXv-0:1.0.12-3.f 100% |  26.7 MiB/s |  27.3 KiB |  00m00s
[180/203] Installing libXv-devel-0:1.0. 100% |  44.9 MiB/s |  46.0 KiB |  00m00s
[181/203] Installing libXxf86vm-0:1.1.5 100% |  26.0 MiB/s |  26.6 KiB |  00m00s
[182/203] Installing libglvnd-glx-1:1.7 100% | 296.3 MiB/s | 606.8 KiB |  00m00s
[183/203] Installing mesa-libGL-0:24.0. 100% | 242.6 MiB/s | 496.9 KiB |  00m00s
[184/203] Installing libglvnd-devel-1:1 100% | 424.1 MiB/s |   2.1 MiB |  00m00s
[185/203] Installing mesa-libGLU-devel- 100% |   0.0   B/s |  17.5 KiB |  00m00s
[186/203] Installing libXt-0:1.3.0-3.fc 100% | 208.6 MiB/s | 427.1 KiB |  00m00s
[187/203] Installing libXt-devel-0:1.3. 100% | 151.3 MiB/s |   1.7 MiB |  00m00s
[188/203] Installing alsa-lib-0:1.2.11- 100% | 173.4 MiB/s |   1.4 MiB |  00m00s
[189/203] Installing qt-x11-1:4.8.7-76. 100% | 342.5 MiB/s |  36.6 MiB |  00m00s
[190/203] Installing llvm-static-0:17.0 100% | 473.1 MiB/s | 253.6 MiB |  00m01s
[191/203] Installing llvm-googletest-0: 100% | 343.5 MiB/s |   2.1 MiB |  00m00s
[192/203] Installing bzip2-devel-0:1.0. 100% | 151.7 MiB/s | 310.7 KiB |  00m00s
[193/203] Installing harfbuzz-devel-0:8 100% | 341.1 MiB/s |   5.1 MiB |  00m00s
[194/203] Installing freetype-devel-0:2 100% | 357.1 MiB/s |   7.9 MiB |  00m00s
[195/203] Installing fontconfig-devel-0 100% |  29.7 MiB/s | 151.9 KiB |  00m00s
[196/203] Installing libXft-devel-0:2.3 100% |   6.2 MiB/s |  44.3 KiB |  00m00s
[197/203] Installing qt-devel-1:4.8.7-7 100% | 207.9 MiB/s |  36.8 MiB |  00m00s
[198/203] Installing llvm-devel-0:17.0. 100% | 181.5 MiB/s |  23.8 MiB |  00m00s
>>> Running post-install scriptlet: llvm-devel-0:17.0.6-5.fc40.x86_64
>>> Stop post-install scriptlet: llvm-devel-0:17.0.6-5.fc40.x86_64
[199/203] Installing boost-devel-0:1.83 100% | 209.1 MiB/s | 145.8 MiB |  00m01s
[200/203] Installing python3-devel-0:3. 100% | 141.7 MiB/s |   1.3 MiB |  00m00s
[201/203] Installing gcc-plugin-annobin 100% |   4.1 MiB/s |  58.6 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[202/203] Installing annobin-plugin-gcc 100% |  55.6 MiB/s | 968.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[203/203] Installing libstdc++-static-0 100% |  24.7 MiB/s |   6.8 MiB |  00m00s
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-3.fc40.x86_64
Warning: skipped PGP checks for 201 package(s).
Finish: build setup for seqan2-2.4.0-22.fc40.src.rpm
Start: rpmbuild seqan2-2.4.0-22.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706486400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.L6G3nI
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seqan-seqan-v2.4.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-seqan-v2.4.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seqan-seqan-v2.4.0
+ rm -rf /builddir/build/BUILD/seqan-seqan-v2.4.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/seqan-seqan-v2.4.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan-disable_stripping.patch
+ /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan2-set_config_filepath.patch
+ /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan2-set_awk_installation.patch
+ /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f
+ find . -perm /755 -type f '(' -name '*.cpp' -o -name '*.h' ')' -exec chmod -x '{}' ';'
++ ls apps/
++ grep -v CMakeLists
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/alf/LICENSE apps/alf/alf-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/bs_tools/LICENSE apps/bs_tools/bs_tools-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/dfi/LICENSE apps/dfi/dfi-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/fiona/LICENSE apps/fiona/fiona-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/fx_tools/LICENSE apps/fx_tools/fx_tools-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/gustaf/LICENSE apps/gustaf/gustaf-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/insegt/LICENSE apps/insegt/insegt-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/mason2/LICENSE apps/mason2/mason2-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/micro_razers/LICENSE apps/micro_razers/micro_razers-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/ngs_roi/LICENSE apps/ngs_roi/ngs_roi-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/pair_align/LICENSE apps/pair_align/pair_align-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/param_chooser/LICENSE apps/param_chooser/param_chooser-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/rabema/LICENSE apps/rabema/rabema-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/razers/LICENSE apps/razers/razers-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/razers3/LICENSE apps/razers3/razers3-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/rep_sep/LICENSE apps/rep_sep/rep_sep-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/sak/LICENSE apps/sak/sak-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/sam2matrix/LICENSE apps/sam2matrix/sam2matrix-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/samcat/LICENSE apps/samcat/samcat-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/searchjoin/LICENSE apps/searchjoin/searchjoin-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/seqan_tcoffee/LICENSE apps/seqan_tcoffee/seqan_tcoffee-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/seqcons2/LICENSE apps/seqcons2/seqcons2-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/sgip/LICENSE apps/sgip/sgip-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/snp_store/LICENSE apps/snp_store/snp_store-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/splazers/LICENSE apps/splazers/splazers-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/stellar/LICENSE apps/stellar/stellar-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/tree_recon/LICENSE apps/tree_recon/tree_recon-LICENSE
+ for appID in `ls apps/ | grep -v CMakeLists`
+ cp -p apps/yara/LICENSE apps/yara/yara-LICENSE
+ cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING
+ rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/css util/py_lib/seqan/dox/tpl/lib/font-awesome/fonts util/py_lib/seqan/dox/tpl/lib/font-awesome/less util/py_lib/seqan/dox/tpl/lib/font-awesome/scss
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.529QrB
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-seqan-v2.4.0
+ mkdir -p build/library
+ pushd build/library
~/build/BUILD/seqan-seqan-v2.4.0/build/library ~/build/BUILD/seqan-seqan-v2.4.0
+ SEQAN_OPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON -DYARA_LARGE_CONTIGS:BOOL=OFF ../..
CMake Warning (dev) at CMakeLists.txt:9 (project):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The CXX compiler identification is GNU 14.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Initializing SeqAn Build System...
--   Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring dox
CMake Deprecation Warning at dox/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Warning (dev) at dox/CMakeLists.txt:18 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.1", minimum required is "2.7") 
--   You need Python 2.x for building dox. (skip the tests)
-- Configuring done (0.3s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_SHARED_LIBS
    BZIP2_INCLUDE_DIR
    BZIP2_LIBRARY
    Boost_INCLUDE_DIR
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    CMAKE_SKIP_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SPHINX_EXECUTABLE
    SPHINX_MAN_OUTPUT
    SPHINX_TEXT_OUTPUT
    YARA_LARGE_CONTIGS
    ZLIB_INCLUDE_DIR
    ZLIB_LIBRARY


-- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Nothing to be done for 'all'.
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0
+ popd
~/build/BUILD/seqan-seqan-v2.4.0
+ mkdir -p build/Release
+ pushd build/Release
~/build/BUILD/seqan-seqan-v2.4.0/build/Release ~/build/BUILD/seqan-seqan-v2.4.0
+ SEQAN_OPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_APPS -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DYARA_LARGE_CONTIGS:BOOL=OFF -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON ../..
CMake Warning (dev) at CMakeLists.txt:9 (project):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The CXX compiler identification is GNU 14.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Initializing SeqAn Build System...
--   Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring apps
CMake Deprecation Warning at apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at apps/alf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/alf
-- Performing Test CXX14_BUILTIN
-- Performing Test CXX14_BUILTIN - Success
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Deprecation Warning at apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/bs_tools
-- Found ZLIB: /usr/lib64/libz.so (found version "1.3.0")  
-- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0")  
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/bs_tools/CMakeLists.txt:123 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.1", minimum required is "2.7") 
CMake Deprecation Warning at apps/dfi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/dfi
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/dfi/CMakeLists.txt:74 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/fiona/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/fiona
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/fiona/CMakeLists.txt:100 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/fx_tools
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Deprecation Warning at apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/gustaf
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/gustaf/CMakeLists.txt:97 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/insegt/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/insegt
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/insegt/CMakeLists.txt:88 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/mason2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/mason2
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/mason2/CMakeLists.txt:167 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/micro_razers
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/micro_razers/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/ngs_roi
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/ngs_roi/CMakeLists.txt:118 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/pair_align
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/pair_align/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/param_chooser
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Deprecation Warning at apps/rabema/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/rabema
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/rabema/CMakeLists.txt:110 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/razers
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/razers/CMakeLists.txt:90 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/razers3/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/razers3
-- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.8") 
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/razers3/CMakeLists.txt:112 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/razers3/CMakeLists.txt:113 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/rep_sep
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Deprecation Warning at apps/sak/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/sak
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/sak/CMakeLists.txt:86 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/sam2matrix
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/sam2matrix/CMakeLists.txt:74 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/samcat/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/samcat
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/samcat/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/searchjoin
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/searchjoin/CMakeLists.txt:79 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/seqan_tcoffee
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/seqan_tcoffee/CMakeLists.txt:73 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/seqcons2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/seqcons2
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/seqcons2/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/sgip/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/sgip
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/sgip/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/snp_store
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/snp_store/CMakeLists.txt:89 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/splazers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/splazers
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/splazers/CMakeLists.txt:87 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/stellar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/stellar
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/stellar/CMakeLists.txt:79 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/tree_recon
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/tree_recon/CMakeLists.txt:73 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at apps/yara/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring apps/yara
-- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0")
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:380 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  apps/yara/CMakeLists.txt:150 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done (1.5s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SPHINX_EXECUTABLE
    SPHINX_MAN_OUTPUT
    SPHINX_TEXT_OUTPUT


-- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release
+ make -O -j1
/usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles/seqan_library.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  0%] Built target seqan_library
make  -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  0%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/statistics.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/af_n2.h: In instantiation of ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/alignment_free_comparison.h:101:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   101 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:188:32:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   188 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/af_n2.h:189:64: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<double> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<double> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<double> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  189 |         itStandardisedKmerCounts = begin(standardisedKmerCounts);
      |                                                                ^
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<double> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<double> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |         open(seqFile, toCString(inFile));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[  0%] Linking CXX executable ../../bin/alf
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  0%] Built target alf
make  -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  0%] Building CXX object apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_score.h:28:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   28 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                          ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:1168:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1168 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                          ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:1168:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1168 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    21 |     if (!open(seqFileIn, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   996 |         loadReadsCroppedId(store, options.readFileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    21 |     if (!open(seqFileIn, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         loadReadsCroppedId(store, options.readFileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    21 |     if (!open(seqFileIn, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         loadReadsCroppedId(store, options.readFileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    21 |     if (!open(seqFileIn, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         loadReadsCroppedId(store, options.readFileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    21 |     if (!open(seqFileIn, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         loadReadsCroppedId(store, options.readFileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[  1%] Linking CXX executable ../../bin/bisar
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../bin/bisar  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  1%] Built target bisar
make  -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  1%] Building CXX object apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   88 |     public std::unary_function<Pair<TSize, TSize>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   99 |     public std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:6,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_score.h:42:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   42 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:17:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   17 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:66:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   66 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:81:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   81 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:129:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  129 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:142:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  142 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:165:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:184:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  184 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:206:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Vcf_>; TDirection = seqan::Tag<seqan::Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:873:31:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   873 |             seqan::VcfFileOut vcfFileOut(toCString(tempFileNameVcf));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                               ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bed_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bed_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Bed_>; TDirection = seqan::Tag<seqan::Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:899:31:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   899 |             seqan::BedFileOut bedFileOut(toCString(tempFileNameBed));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                               ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1618:57:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1618 |     TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1163 |                 printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   742 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1355:36:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1355 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:755:36:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   755 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfFileOut, bedFileOut, methOptions, options);    //bs
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>; TFileNames = StringSet<String<char, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   792 |     loadContigs(fragmentStore1, genomeFileNameList);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1163 |                 printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   742 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                       ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1163 |                 printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   742 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>; TFileNames = StringSet<String<char, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   792 |     loadContigs(fragmentStore1, genomeFileNameList);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1163 |                 printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   742 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                                       ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; TBedStream = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1163 |                 printAlignment(std::cout, layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35:   required from ‘bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore<TSpec>&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector<seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >*>; TRecords = std::vector<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile<seqan::Tag<seqan::Vcf_>, seqan::Tag<seqan::Output_> >; seqan::BedFileOut = seqan::FormattedFile<seqan::Tag<seqan::Bed_>, seqan::Tag<seqan::Output_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   742 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfFileOut, bedFileOut, methOptions, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   901 |             detectSNPsForContig(vcfFileOut, bedFileOut, fragmentStore1, currContigId, bamFileIns, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>; TFileNames = StringSet<String<char, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   792 |     loadContigs(fragmentStore1, genomeFileNameList);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>; TFileNames = StringSet<String<char, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   792 |     loadContigs(fragmentStore1, genomeFileNameList);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig<SnpStoreSpec_>; TFileNames = StringSet<String<char, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   792 |     loadContigs(fragmentStore1, genomeFileNameList);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1265 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘readMatchesFromSamBam<seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, int, long, SNPCallingOptions>(seqan::String<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, int, long, long, SNPCallingOptions&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[  3%] Linking CXX executable ../../bin/casbar
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../bin/casbar  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:351:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:352:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:353:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:354:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:361:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:362:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:363:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘adjustConstantsSize.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:364:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘adjustConstantsSize.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  3%] Built target casbar
make  -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  4%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:14:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   14 | struct ConvertCT : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:23:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   23 | struct ConvertGA : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23:   required from ‘bool preProcess(TOptions&) [with TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     seqan::SeqFileIn  seqFileIn(toCString(options.inputFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |     preProcess(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23:   required from ‘bool preProcess(TOptions&) [with TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    41 |     seqan::SeqFileIn  seqFileIn(toCString(options.inputFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                       ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   146 |     preProcess(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23:   required from ‘bool preProcess(TOptions&) [with TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     seqan::SeqFileIn  seqFileIn(toCString(options.inputFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |     preProcess(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:42:23:   required from ‘bool preProcess(TOptions&) [with TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    42 |     seqan::SeqFileOut seqFileOut(toCString(options.outputFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |     preProcess(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23:   required from ‘bool preProcess(TOptions&) [with TOptions = AppOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     seqan::SeqFileIn  seqFileIn(toCString(options.inputFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |     preProcess(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[  4%] Linking CXX executable ../../bin/four2three
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../bin/four2three  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  4%] Built target four2three
make  -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  4%] Building CXX object apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:27:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:268:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct LessSubstringEnd : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:292:27: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  292 | struct LessRange : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:309:25: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  309 | struct LessLex : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |                 if (!open(seqFile, toCString(fileNames[s])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   498 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   835 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[  4%] Linking CXX executable ../../bin/dfi
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../bin/dfi  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_goUp’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  4%] Built target dfi
make  -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  4%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:2:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   907 |         success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   907 |         success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   907 |         success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   907 |         success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   907 |         success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = Stats*; TParam = Stats]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Stats*; TParam = Stats]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Stats]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Stats]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1697 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<Stats>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1725 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1785 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&&, TSize) [with T = String<Stats>&; TSize = int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1149 |     return resize(std::forward<T>(me), new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:986:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   986 |     resize(stats, options.numThreads);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:98:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   98 | struct Stats
      |        ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:98:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   98 | struct Stats
      |        ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:6:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘Stats::Stats(Stats&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[  6%] Linking CXX executable ../../bin/compute_gain
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../bin/compute_gain  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  6%] Built target compute_gain
make  -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  7%] Building CXX object apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/parallel/base.h:36,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/parallel/algorithm:36,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:81:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:118:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1636:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1636 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1654:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1654 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4410:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4410 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   82 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4412:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4412 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:115:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  3574 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3582 |             appendValue(correctCandidates, thickestBranchOccs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2259:22:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2259 |                 clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1660 |         goNextImpl(it, traits);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1655 |         goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3475:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3475 |             goNext(iter);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  3574 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3582 |             appendValue(correctCandidates, thickestBranchOccs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5002:23:   required from ‘int writeOutput(unsigned int&, const TFragmentStore&, const FionaOptions&) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5002 |         success = open(outFile, toCString(options.outputFilename));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5611:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5611 |     int res = writeOutput(numCorrected, store, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   302 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
[  7%] Linking CXX executable ../../bin/fiona
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../bin/fiona  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_goUp’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign.constprop.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18,
    inlined from ‘goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18,
    inlined from ‘goNextImpl.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘goNextImpl.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18,
    inlined from ‘goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18,
    inlined from ‘goNextRightImpl.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2272:24:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘goNextRightImpl.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  7%] Built target fiona
make  -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  9%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/parallel/base.h:36,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/parallel/algorithm:36,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:81:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:118:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1636:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1636 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1654:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1654 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4410:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4410 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   82 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4412:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4412 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:115:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  3574 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3582 |             appendValue(correctCandidates, thickestBranchOccs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4635 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2259:22:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2259 |                 clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1660 |         goNextImpl(it, traits);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1655 |         goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3475:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3475 |             goNext(iter);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  3574 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >&; TSource = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3582 |             appendValue(correctCandidates, thickestBranchOccs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  4893 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5002:23:   required from ‘int writeOutput(unsigned int&, const TFragmentStore&, const FionaOptions&) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5002 |         success = open(outFile, toCString(options.outputFilename));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5611:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  5611 |     int res = writeOutput(numCorrected, store, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18:   required from ‘bool seqan::loadReadsNoNames(FragmentStore<TSpec, TConfig>&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   578 |         if (!open(seqFile, toCString(fileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5438 |     if (!loadReadsNoNames(store, options.inputFilename, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   302 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   349 |             TBase(_index) {}
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TagSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  4874 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  5533 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
[  9%] Linking CXX executable ../../bin/fiona_illumina
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_goUp’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18,
    inlined from ‘goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18,
    inlined from ‘goNextImpl.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘goNextImpl.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18,
    inlined from ‘goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18,
    inlined from ‘goNextRightImpl.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2272:24:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘goNextRightImpl.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign.constprop.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  9%] Built target fiona_illumina
make  -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 10%] Building CXX object apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:254:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   254 |     if (!open(bamFile, toCString(options.inBamPath)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:254:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   254 |     if (!open(bamFile, toCString(options.inBamPath)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘main’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘main’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘main’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘main’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘main’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘main’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘main’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘main’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 10%] Linking CXX executable ../../bin/fx_bam_coverage
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../bin/fx_bam_coverage  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 10%] Built target fx_bam_coverage
make  -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 12%] Building CXX object apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |     if (!open(seqFile, toCString(options.inFilename)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 12%] Linking CXX executable ../../bin/fx_fastq_stats
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 12%] Built target fx_fastq_stats
make  -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 12%] Building CXX object apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:28,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:27:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:24:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_types.h:155:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  155 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_types.h:207:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  207 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parse_lm.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/create_stellarmatches_from_file.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_parse_options.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:25:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:1054:14:   required from ‘bool _writeGlobalBreakpoints(seqan::String<TString>&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1054 |     if (!open(vcfOut, fn_vcf.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:283:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   283 |     _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGff_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:356:14:   required from ‘bool _writeGlobalBreakpoints(seqan::String<TString>&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; seqan::Gff = seqan::Tag<seqan::TagGff_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   356 |     if (!open(gffOut, fn_gff.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:282:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   282 |     _writeGlobalBreakpoints(globalBreakpoints, msplazerOptions, Gff());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGtf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGtf_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:356:14:   required from ‘bool _writeGlobalBreakpoints(seqan::String<TString>&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; seqan::Gff = seqan::Tag<seqan::TagGff_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   356 |     if (!open(gffOut, fn_gff.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:282:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   282 |     _writeGlobalBreakpoints(globalBreakpoints, msplazerOptions, Gff());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:1054:14:   required from ‘bool _writeGlobalBreakpoints(seqan::String<TString>&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1054 |     if (!open(vcfOut, fn_vcf.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:283:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   283 |     _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:190:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:801:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   801 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervals(String<TCargo>&, const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1532:18:   required from ‘void seqan::findIntervals(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1532 |     findIntervals(result, g, pm, act_knot, query_begin, query_end);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1513:18:   required from ‘void seqan::findIntervals(String<TValue>&, const IntervalTree<TValue, TCargo>&, TValue2, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1513 |     findIntervals(result, tree.g, tree.pm, query_begin, query_end);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:255:18:   required from ‘bool _checkRightMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   255 |     findIntervals(confMateMatches, gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:294:42:   required from ‘bool _checkMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   294 |             return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:458:35:   required from ‘void _initialiseGraphMatePairs(QueryMatches<StellarMatch<TSequence, TId> >&, TId&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |             if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_algorithms.h:840:42:   required from ‘void _chainQueryMatches(seqan::StringSet<QueryMatches<StellarMatch<TSequence, TId> > >&, seqan::String<TCargo>&, seqan::String<TEmission>&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TScoreAlloc = seqan::String<int>; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   840 |                 _initialiseGraphMatePairs(stellarMatches[i], queryIds[i], chain, msplazerOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:230:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   230 |     _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1562 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1575 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1598 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   143 |     if (!open(leftMates, toCString(fileNameL)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    71 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:427:10:   required from ‘void seqan::assignSource(Gaps<TSequence, Tag<ArrayGaps_> >&, const TSequence2&) [with TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   427 |     value(gaps._source) = source;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   852 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   852 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   852 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   146 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned long’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(unsigned long const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 14%] Linking CXX executable ../../bin/gustaf
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:328:8:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:328:8:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22,
    inlined from ‘_goDown’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:814:22,
    inlined from ‘goDown’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20,
    inlined from ‘goNextImpl’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2256:24,
    inlined from ‘goNext’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19,
    inlined from ‘goNext’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15,
    inlined from ‘findRepeats’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:527:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘findRepeats’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22,
    inlined from ‘goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18,
    inlined from ‘goNextImpl’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28,
    inlined from ‘goNext’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19,
    inlined from ‘goNext’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15,
    inlined from ‘findRepeats’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:527:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘findRepeats’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘_getNextBestEndPosition’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_waterman_eggert_impl.h:659:20,
    inlined from ‘_localAlignmentNext’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:42,
    inlined from ‘nextLocalAlignment’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35,
    inlined from ‘nextLocalAlignment’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30,
    inlined from ‘verifySwiftHit’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:607:30,
    inlined from ‘stellar.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘stellar.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 14%] Built target gustaf
make  -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 14%] Building CXX object apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -MF CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o.d -o CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   257 |         _open(*this, fileName, openMode, True());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   196 |         seqan::SeqFileIn l(toCString(fileNameL));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                          ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   437 |         _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   196 |         seqan::SeqFileIn l(toCString(fileNameL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                          ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   437 |         _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   196 |         seqan::SeqFileIn l(toCString(fileNameL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                          ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   437 |         _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   196 |         seqan::SeqFileIn l(toCString(fileNameL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                          ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   437 |         _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:330:27:   required from ‘int _writeSequences(seqan::CharString&, const seqan::StringSet<TString, seqan::Owner<> >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   330 |         seqan::SeqFileOut seqFile(toCString(outPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                           ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:439:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   439 |         _writeSequences(options.outPaths[0], seqs, sIds, quals);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   196 |         seqan::SeqFileIn l(toCString(fileNameL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                          ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   437 |         _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:330:27:   required from ‘int _writeSequences(seqan::CharString&, const seqan::StringSet<TString, seqan::Owner<> >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   330 |         seqan::SeqFileOut seqFile(toCString(outPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                           ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:439:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   439 |         _writeSequences(options.outPaths[0], seqs, sIds, quals);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 15%] Linking CXX executable ../../bin/gustaf_mate_joining
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf_mate_joining.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -o ../../bin/gustaf_mate_joining  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 15%] Built target gustaf_mate_joining
make  -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 15%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:14:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:16:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:20:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h: In instantiation of ‘void seqan::createReadCountGFF(TFile&, TReadAnnoStore&, FragmentStore<TSpec, TConfig>&) [with TFile = std::basic_fstream<char>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:889:23:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   889 |     createReadCountGFF(readOutput, readAnnoStore, fragStore);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   199 |     ngsOverlapper(options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:75:35: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   75 |                         itAnnoIds = begin(getValue(itCountStore).annoIds);
      |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:12:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:76:38: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   76 |                         itAnnoIdsEnd = end(getValue(itCountStore).annoIds);
      |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:100:43: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  100 |                                 itAnnoIds = begin(getValue(itCountStore).annoIds);
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:101:46: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  101 |                                 itAnnoIdsEnd = end(getValue(itCountStore).annoIds);
      |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:134:51: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  134 |                                         itAnnoIds = begin(getValue(itCountStore).annoIds);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:135:54: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  135 |                                         itAnnoIdsEnd = end(getValue(itCountStore).annoIds);
      |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:169:43: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  169 |                                 itAnnoIds = begin(getValue(itCountStore).annoIds);
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:170:46: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  170 |                                 itAnnoIdsEnd = end(getValue(itCountStore).annoIds);
      |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h: In instantiation of ‘seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> > seqan::nodeDown(const Iter<TFragmentStore, AnnotationTree<TSpec> >&) [with TFragmentStore = FragmentStore<>; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:48:64:   required from ‘void seqan::adjustParentEntries(FragmentStore<TSpec, TConfig>&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    48 |             getAnnotation(it).contigId = getAnnotation(nodeDown(it)).contigId;  // If no child exists: nothing happens
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                                        ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:851:21:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   851 |         adjustParentEntries(fragStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
  853 |     Iter<TFragmentStore, AnnotationTree<TSpec> > tmp(it);
      |                                                  ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  272 |     operator = (Iter const &_origin)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
  855 |     return tmp;
      |            ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  272 |     operator = (Iter const &_origin)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of ‘void seqan::getIdsForRead(TAnnoIds&, FragmentStore<TSpec, TConfig>&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TIntervalTree = IntervalTree<long int, unsigned int>; TIntervals = String<Interval<unsigned int>, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:754:18:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:   754 |                                 getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:       |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:90:13: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   90 |         itR = begin(ids);
      |         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of ‘void seqan::buildAnnoCountStore(TAnnoCountStore&, FragmentStore<TSpec, TConfig>&, TReadAnnoStore&) [with TAnnoCountStore = String<unsigned int, Alloc<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:760:21:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   760 |         buildAnnoCountStore(annoCountStore, fragStore, readAnnoStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:536:51: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  536 |                                         itAnnoIds = begin(getValue(itRead).annoIds);
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:537:54: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  537 |                                         itAnnoIdsEnd = end(getValue(itRead).annoIds);
      |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h: In instantiation of ‘void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   761 |         buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion,  fragStore, readAnnoStore, tupelSize, exact_nTuple);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:191:92: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  191 |                                                                                 itSecTuple = begin(tempSecTupleSet);
      |                                                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:192:95: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  192 |                                                                                 itSecTupleEnd = end(tempSecTupleSet);
      |                                                                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:208:57: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  208 |                                                 itTuple = begin(tupleSet);
      |                                                 ~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:209:60: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  209 |                                                 itTupleEnd = end(tupleSet);
      |                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:238:76: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  238 |                                                                 itSecTuple = begin(secTupleSet);
      |                                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:239:79: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  239 |                                                                 itSecTupleEnd = end(secTupleSet);
      |                                                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:291:57: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  291 |                                                 itTuple = begin(tupleSet);
      |                                                 ~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:292:60: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  292 |                                                 itTupleEnd = end(tupleSet);
      |                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:298:68: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  298 |                                                         itSecTuple = begin(secTupleSet);
      |                                                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:299:71: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  299 |                                                         itSecTupleEnd = end(secTupleSet);
      |                                                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of ‘void seqan::buildTupleCountStore(TTupleCountStore&, FragmentStore<TSpec, TConfig>&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:624:22:   required from ‘void seqan::getResults(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   624 |         buildTupleCountStore(tupleCountStore, fragStore, readAnnoStore, tupelSize, exact_nTuple);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:872:13:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   872 |                 getResults(readAnnoStore, annoCountStore, tupleCountStore, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:354:57: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  354 |                                                 itTuple = begin(tupleSet);
      |                                                 ~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:355:60: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  355 |                                                 itTupleEnd = end(tupleSet);
      |                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:384:76: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  384 |                                                                 itSecTuple = begin(secTupleSet);
      |                                                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:385:79: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  385 |                                                                 itSecTupleEnd = end(secTupleSet);
      |                                                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Bam_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:838:15:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   838 |     BamFileIn inSam(toCString(options.nameSAM));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |               ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h: In instantiation of ‘void seqan::create_nTuple(TStringSet&, FragmentStore<TSpec, TConfig>&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TId = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:122:60:   required from ‘void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   122 |                                 if (exact_nTuple && n <= length(annoIds)) create_nTuple(tupleSet, fragStore, annoIds, getValue(itP), n);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                           ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   761 |         buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion,  fragStore, readAnnoStore, tupelSize, exact_nTuple);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:69:23: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   69 |                 itSet = begin(tempTupleSet);
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:70:26: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   70 |                 itSetEnd = end(tempTupleSet);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h: In instantiation of ‘void seqan::create_Tuple(TStringSet&, FragmentStore<TSpec, TConfig>&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TId = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:126:41:   required from ‘void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   126 |                                 else if (!exact_nTuple) create_Tuple(tupleSet, fragStore, annoIds, getValue(itP), n);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                                         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   761 |         buildTupleCountStore_Fusion(tupleCountStore, tupleCountStore_Fusion,  fragStore, readAnnoStore, tupelSize, exact_nTuple);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:97:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   97 |                 it = begin(tempTupleSet);
      |                 ~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:98:23: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
   98 |                 itEnd = end(tempTupleSet);
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> >, seqan::Owner<> >]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGff_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagGff_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:848:15:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   848 |     GffFileIn inGff(toCString(options.nameGFF));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |               ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervals(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<long int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_intervaltree.h:182:18:   required from ‘void seqan::findIntervalsForInterval(String<TCargo>&, TIntervalTree&, TInterval&, unsigned int) [with TIntervalTree = IntervalTree<long int, unsigned int>; TInterval = Interval<unsigned int>; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   182 |     findIntervals(result1, intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:85:27:   required from ‘void seqan::getIdsForRead(TAnnoIds&, FragmentStore<TSpec, TConfig>&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TIntervalTree = IntervalTree<long int, unsigned int>; TIntervals = String<Interval<unsigned int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    85 |                 findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:754:18:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   754 |                                 getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   870 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1441 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1453 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1475 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Bam_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:838:15:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   838 |     BamFileIn inSam(toCString(options.nameSAM));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |               ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGtf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGtf_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagGff_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:848:15:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   848 |     GffFileIn inGff(toCString(options.nameGFF));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |               ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2236:27:   required from ‘void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement<long int, GapAnchor<long int>, void>*; TPos = long int; TSize = long int; TReadSeqStore = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2236 |                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2321:40:   required from ‘void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps<Tag<Nothing_>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TContigGapsPW = Gaps<Tag<Nothing_>, AnchorGaps<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment> > >; TReadGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedReadIter = AlignedReadStoreElement<long int, GapAnchor<long int>, void>*; TReadSeqStore = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2321 |                 _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2437:31:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2437 |         _twoWayMergeAlignments(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^
    2438 |                 contigGapsGlobal, contigGapsPW, readGaps,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2439 |                 firstOverlapOld, lastOverlapOld, firstOverlapNew, it,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2440 |                 store.readSeqStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TForwardIter = Iter<VirtualStream<char, Tag<Input_> >, StreamIterator<Tag<Input_> > >; TFormat = Tag<Sam_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   337 |         convertPairWiseToGlobalAlignment(store, contigAnchorGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   361 |     readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   373 |     readRecords(store, bamFile, FragStoreImportFlags());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   839 |     readRecords(fragStore, inSam);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2393:29:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  2393 |         TContigGapsPW       contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TForwardIter = Iter<VirtualStream<char, Tag<Input_> >, StreamIterator<Tag<Input_> > >; TFormat = Tag<Sam_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   337 |         convertPairWiseToGlobalAlignment(store, contigAnchorGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   361 |     readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   373 |     readRecords(store, bamFile, FragStoreImportFlags());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   839 |     readRecords(fragStore, inSam);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2394:29:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2394 |         TReadGaps           readGaps(store.readSeqStore[it->readId], it->gaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TForwardIter = Iter<VirtualStream<char, Tag<Input_> >, StreamIterator<Tag<Input_> > >; TFormat = Tag<Sam_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   337 |         convertPairWiseToGlobalAlignment(store, contigAnchorGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   361 |     readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   373 |     readRecords(store, bamFile, FragStoreImportFlags());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   839 |     readRecords(fragStore, inSam);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   199 |     ngsOverlapper(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::Tag<seqan::Sam_> >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::Tag<seqan::Sam_> >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::Tag<seqan::Sam_> >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::Tag<seqan::Sam_> >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 17%] Linking CXX executable ../../bin/insegt
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 17%] Built target insegt
make  -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:49:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:53:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function ‘SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:55:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervals(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, GenomicInterval>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1502:18:   required from ‘void seqan::findIntervals(String<TValue>&, const IntervalTree<TValue, TCargo>&, TValue2) [with TValue = int; TCargo = GenomicInterval; TValue2 = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1502 |     findIntervals(result, it.g, it.pm, query);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp:718:18:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   718 |     findIntervals(intervals, svIntervalTree, svPos);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1441 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1453 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1475 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:51,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   106 |     if (!open(stream, filename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   106 |     if (!open(stream, filename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   106 |     if (!open(stream, filename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:56:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   264 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                        ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  140 |             _host(std::forward<THost_>(host)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   140 |             _host(std::forward<THost_>(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:56:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   264 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                        ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    98 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:193:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = std::mersenne_twister_engine<long unsigned int, 32, 624, 397, 31, 2567483615, 11, 4294967295, 7, 2636928640, 15, 4022730752, 18, 1812433253>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   193 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   264 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   663 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   458 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:193:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = std::mersenne_twister_engine<long unsigned int, 32, 624, 397, 31, 2567483615, 11, 4294967295, 7, 2636928640, 15, 4022730752, 18, 1812433253>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   193 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   264 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:56:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   153 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                        ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  140 |             _host(std::forward<THost_>(host)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   140 |             _host(std::forward<THost_>(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:56:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   153 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                        ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    98 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:59:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = std::mersenne_twister_engine<long unsigned int, 32, 624, 397, 31, 2567483615, 11, 4294967295, 7, 2636928640, 15, 4022730752, 18, 1812433253>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    59 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   153 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   663 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   458 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:59:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = std::mersenne_twister_engine<long unsigned int, 32, 624, 397, 31, 2567483615, 11, 4294967295, 7, 2636928640, 15, 4022730752, 18, 1812433253>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    59 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   153 |         _simulateSequence(seq, rng, TRevCompFrag(holder), cigar);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:167:18:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   167 |         if (!open(vcfFileIn, toCString(vcfFileName)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:167:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   167 |         if (!open(vcfFileIn, toCString(vcfFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 25%] Linking CXX static library libmason_sim.a
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
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make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 25%] Built target mason_sim
make  -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 25%] Building CXX object apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 26%] Linking CXX executable ../../bin/mason_genome
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../bin/mason_genome  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 26%] Built target mason_genome
make  -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 28%] Building CXX object apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   143 |     if (!open(outStream, toCString(options.methFastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   143 |     if (!open(outStream, toCString(options.methFastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   143 |     if (!open(outStream, toCString(options.methFastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 28%] Linking CXX executable ../../bin/mason_methylation
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../bin/mason_methylation  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 28%] Built target mason_methylation
make  -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 28%] Building CXX object apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   142 |     if (!open(inFragments, toCString(options.inputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   142 |     if (!open(inFragments, toCString(options.inputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   142 |     if (!open(inFragments, toCString(options.inputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:153:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   153 |     if (!open(outReads, toCString(options.outFileNameLeft)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   142 |     if (!open(inFragments, toCString(options.inputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 29%] Linking CXX executable ../../bin/mason_frag_sequencing
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 29%] Built target mason_frag_sequencing
make  -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Building CXX object apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/random:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:43:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:833:18:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   833 |         if (!open(vcfFileOut, toCString(options.vcfOutFile)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   884 |             if (!open(outSeqStream, toCString(options.fastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Vcf_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Vcf_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:833:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   833 |         if (!open(vcfFileOut, toCString(options.vcfOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   884 |             if (!open(outSeqStream, toCString(options.fastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   884 |             if (!open(outSeqStream, toCString(options.fastaOutFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 31%] Linking CXX executable ../../bin/mason_variator
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_simulateFromSizes’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:369:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551504’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_simulateFromSizes’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Built target mason_variator
make  -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Building CXX object apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:43:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:51:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   103 |             if (!open(outStream, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   103 |             if (!open(outStream, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   103 |             if (!open(outStream, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 31%] Linking CXX executable ../../bin/mason_materializer
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Built target mason_materializer
make  -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 32%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/fragment_generation.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/fragment_generation.h:51:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1155 |         if (!open(outSeqsLeft, toCString(options.outFileNameLeft)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1155 |         if (!open(outSeqsLeft, toCString(options.outFileNameLeft)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1155 |         if (!open(outSeqsLeft, toCString(options.outFileNameLeft)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:269:34:   required from ‘void seqan::_reinitArrayGaps(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   269 |     _setLength(gaps, length(value(gaps._source)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:155:25:   required from ‘seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> >::Gaps(TSequence&) [with TSequence = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   155 |         _reinitArrayGaps(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:219:57:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   219 |         seqan::Gaps<TContigInfix> gapsContig(contigInfix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   211 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   228 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, alignConfig, lDiag, uDiag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 32%] Linking CXX executable ../../bin/mason_simulator
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 32%] Built target mason_simulator
make  -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 34%] Building CXX object apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   149 |             if (!open(seqFileOut, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGff_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:152:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   152 |             if (!open(gffFileIn, toCString(options.inputGffFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   149 |             if (!open(seqFileOut, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagGtf_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGtf_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagGff_>, TagList<Tag<TagGtf_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagGff_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:152:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   152 |             if (!open(gffFileIn, toCString(options.inputGffFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   149 |             if (!open(seqFileOut, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:379:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:386:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 34%] Linking CXX executable ../../bin/mason_splicing
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 34%] Built target mason_splicing
make  -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 35%] Building CXX object apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 35%] Linking CXX executable ../../bin/mason_tests
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests  -lrt -lz libmason_sim.a -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘addVertex’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 35%] Built target mason_tests
make  -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:25:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:643:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  643 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:672:49: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  672 |         struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:728:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  728 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:760:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  760 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:38:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1359:35: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1359 |                 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:   initializing argument 2 of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, const RazerSOptions<TSpec>&, MicroRNA) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TSpec = RazerSSpec<>]’
 1257 |         Segment<TGenome, InfixSegment> inf,             // potential match genome region
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1471:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1471 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1697 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1697 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1471:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1471 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1472:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1472 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1697 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2279:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2279 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1697 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2282:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2282 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   414 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1440:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1440 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1473:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1473 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1455:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1455 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1473:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1473 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   599 |     return container(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1478:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1478 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   254 |     setValue(_dataHost(me), std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1971:11:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1971 |                         setHost(forwardPatterns[i], indexText(swiftIndex)[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   165 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   551 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:992:51,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1010:66,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1020:53,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp
[ 37%] Linking CXX executable ../../bin/micro_razers
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../bin/micro_razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 37%] Built target micro_razers
make  -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 39%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   432 |     if (!open(roiFileIn, toCString(options.inputFileName)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   432 |     if (!open(roiFileIn, toCString(options.inputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 39%] Linking CXX executable ../../bin/roi_plot_thumbnails
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 39%] Built target roi_plot_thumbnails
make  -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 40%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   88 |     public std::unary_function<Pair<TSize, TSize>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   99 |     public std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Output_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:318:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   318 |     if (!open(roiFileOut, toCString(options.outputFileName)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:318:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   318 |     if (!open(roiFileOut, toCString(options.outputFileName)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 40%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   88 |     public std::unary_function<Pair<TSize, TSize>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   99 |     public std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 42%] Linking CXX executable ../../bin/bam2roi
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 42%] Built target bam2roi
make  -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:876:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   876 |     if (!open(roiFileIn, toCString(options.inputRoiFile)))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Roi_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Roi_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:876:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   876 |     if (!open(roiFileIn, toCString(options.inputRoiFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:379:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:386:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::GffRecord&, seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:51,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:52:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 45%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bed_io.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 45%] Linking CXX executable ../../bin/roi_feature_projection
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 45%] Built target roi_feature_projection
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_global_1111
make  -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -MF CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::Lcs_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::Lcs_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::Lcs(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_lcs
make  -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::Tag<seqan::Nothing_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::SmithWaterman_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TAlignSpec = seqan::Tag<seqan::Nothing_>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::SmithWaterman_>; TSpec = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    41 |     pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_local
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Built target pair_align_global_0000
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Built target pair_align_global_0001
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Built target pair_align_global_0010
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Built target pair_align_global_0011
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Built target pair_align_global_0100
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Built target pair_align_global_0101
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_0110
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<false, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<false, true, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<false, true, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_0111
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_1000
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Built target pair_align_global_1001
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Built target pair_align_global_1010
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, false, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, false, true, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, false, true, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Built target pair_align_global_1011
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Built target pair_align_global_1100
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, false, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, false, true>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Built target pair_align_global_1101
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    86 |     if (!open(inFile, fileName))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    86 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, false>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = seqan::Tag<seqan::NeedlemanWunsch_>; TDiag = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   184 |     _loadSequences(sequenceSet, sequenceNames, seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42:   required from ‘void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >; TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   276 |     pairwise_align<TAlphabet, TAlignSpec>(sc, seqfile, alg, low, high, banded, outfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31:   required from ‘void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TAlignSpec = seqan::AlignConfig<true, true, true, false>; seqan::Dna5 = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   289 |         _initAlignParams<Dna5>(options, sc, alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52:   required from ‘void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag<seqan::NeedlemanWunsch_>; TSpec = seqan::AlignConfig<true, true, true, false>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   364 |     if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    68 |         pairAlignConfig(options, NeedlemanWunsch(), config);                                                       \
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Built target pair_align_global_1110
make  -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 59%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -MF CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o.d -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 59%] Linking CXX static library libpair_align_lib.a
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1
/usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o
/usr/bin/ranlib libpair_align_lib.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 59%] Built target pair_align_lib
make  -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 60%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align.cpp:16:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 60%] Linking CXX executable ../../bin/pair_align
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../bin/pair_align  lib/libpair_align_lib.a -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 60%] Built target pair_align
make  -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 62%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:32:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:30,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:676:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  676 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:704:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  704 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:730:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  730 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:748:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:770:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1430:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1430 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1653 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2242 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1653 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2245 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1430:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1430 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1431:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1431 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1653 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2253 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1653 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2256:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2256 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1399:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1399 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1432:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1432 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1625 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2239:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2239 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  1625 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2242 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1625 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2245 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1414:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1414 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1432:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1432 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   599 |     return container(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1437:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2076 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2250 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:840:14:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2047:11:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2047 |                         setHost(forwardPatterns[i], indexText(swiftIndex)[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2150 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2239:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2239 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   712 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1079 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   339 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:829:51,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1107:20,
    inlined from ‘main’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘main’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 62%] Linking CXX executable ../../bin/param_chooser
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 62%] Built target param_chooser
make  -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 62%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:30,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:676:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  676 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:704:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  704 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:730:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  730 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:748:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:770:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:829:51:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:847:66:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:857:53:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::parseGappedParams<std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 64%] Linking CXX executable ../../bin/test_funcs_param_chooser
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 64%] Built target test_funcs_param_chooser
make  -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 64%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 65%] Linking CXX executable ../../bin/rabema_prepare_sam
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 65%] Built target rabema_prepare_sam
make  -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 67%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   118 |         _host(_toPointer(host)),
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:254:100:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:513:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   513 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   558 |     _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22:   required from ‘void seqan::_reinitPattern(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   660 |     _patternFirstInit(pattern, needle(pattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   403 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, seqan::BamFileIn&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   899 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     900 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1203 |         res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1204 |                                      contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  625 |     return ModifiedString<THost, ModReverse>(host);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   254 |     setValue(_dataHost(me), std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   403 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, seqan::BamFileIn&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   899 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     900 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1203 |         res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1204 |                                      contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   625 |     return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   403 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, seqan::BamFileIn&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   899 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     900 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1203 |         res = matchesToErrorFunction(errorCurves, readAlignmentDistances, inBam, readNameStore,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1204 |                                      contigNames(context(inBam)), faiIndex, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 67%] Linking CXX executable ../../bin/rabema_build_gold_standard
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 67%] Built target rabema_build_gold_standard
make  -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 67%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:33:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervals(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1502:18:   required from ‘void seqan::findIntervals(String<TValue>&, const IntervalTree<TValue, TCargo>&, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1502 |     findIntervals(result, it.g, it.pm, query);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:644:22:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamFileIn&, const seqan::String<GsiRecord>&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   644 |         findIntervals(queryResult, intervalTrees[seqId], lastPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1003 |             int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1004 |                                           faiIndex, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1005 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1401 |         res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1402 |                                              inGsiIter, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1441 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1453 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1475 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   558 |     _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22:   required from ‘void seqan::_reinitPattern(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   660 |     _patternFirstInit(pattern, needle(pattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamFileIn&, const seqan::String<GsiRecord>&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   623 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1003 |             int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1004 |                                           faiIndex, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1005 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1401 |         res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1402 |                                              inGsiIter, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  625 |     return ModifiedString<THost, ModReverse>(host);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   254 |     setValue(_dataHost(me), std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamFileIn&, const seqan::String<GsiRecord>&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   623 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1003 |             int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1004 |                                           faiIndex, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1005 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1401 |         res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1402 |                                              inGsiIter, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   625 |     return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamFileIn&, const seqan::String<GsiRecord>&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   623 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; seqan::BamFileIn = seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1003 |             int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1004 |                                           faiIndex, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1005 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1401 |         res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1402 |                                              inGsiIter, options, MyersUkkonenReads());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 68%] Linking CXX executable ../../bin/rabema_evaluate
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 68%] Built target rabema_evaluate
make  -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 68%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:8:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:3:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   118 |         _host(_toPointer(host)),
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:254:100:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:513:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   513 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   558 |     _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22:   required from ‘void seqan::_reinitPattern(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   660 |     _patternFirstInit(pattern, needle(pattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  625 |     return ModifiedString<THost, ModReverse>(host);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:840:14:   required from ‘void seqan::setValue(Holder<TValue, Tag<Tristate_> >&, const TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   840 |     set(value(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   254 |     setValue(_dataHost(me), std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   625 |     return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   212 |         setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   558 |     _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22:   required from ‘void seqan::_reinitPattern(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   660 |     _patternFirstInit(pattern, needle(pattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   255 |     _reinitPattern(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   452 |         setHost(*this, std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    94 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 70%] Linking CXX executable ../../bin/rabema_do_search
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search  -lrt -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 70%] Built target rabema_do_search
make  -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 70%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:696:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  696 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:728:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  728 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:760:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  760 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:51:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:221:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  221 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1471 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1717:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1717 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1471 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10:   required from ‘TStream& seqan::operator<<(TStream&, const Segment<THost, TSpec>&) [with TStream = VirtualStream<char, Tag<Output_> >; THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   789 |     write(it, source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:722:12:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |                                                 file << reads[(*it).rseqNo];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                 ~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:232:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   232 |         dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   395 |             data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:394:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   394 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1699 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1699 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1471 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1472:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1472 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2279:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2279 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1699 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2279:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2279 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2282:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2282 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1699 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2282:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2282 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   622 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1876 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1845 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1965 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1473:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1473 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10:   required from ‘TStream& seqan::operator<<(TStream&, const Segment<THost, TSpec>&) [with TStream = VirtualStream<char, Tag<Output_> >; THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   789 |     write(it, source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:722:12:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |                                                 file << reads[(*it).rseqNo];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                 ~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:232:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   232 |         dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   375 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   375 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2268 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   375 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1666 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2043 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2271 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1455:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1455 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1473:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1473 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   369 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1845 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1965 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   428 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   599 |     return container(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1478:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1478 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   492 |                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                             ~~~~~~~~~~~^
     493 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     494 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     495 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2276 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13:   required from ‘void seqan::setHost(Pattern<TNeedle, TSpec>&, TNeedle2&&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Myers<FindInfix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   254 |     setValue(_dataHost(me), std::forward<TNeedle2>(ndl));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1971:11:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1971 |                         setHost(forwardPatterns[i], indexText(swiftIndex)[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2206 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:259:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:394:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   394 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   777 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2203 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2265 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |     int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   697 |     int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:992:51,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1010:66,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1020:53,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 71%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp
[ 71%] Linking CXX executable ../../bin/razers
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 71%] Built target razers
make  -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 73%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:57:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:63:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:34,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:127:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:83:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:265:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  265 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:321:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  321 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:366:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  366 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   785 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1351 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1351 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1351 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1362 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1304 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1362 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1307 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1362 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
   87 |   #define SEQAN_DO_PRAGMA(x) _Pragma(# x)
      |                              ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
   88 |   #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                               ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  672 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   785 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   785 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   785 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:745:69:   required from ‘void seqan::write(TTarget&, FragmentStore<TSpec, TConfig>&, Amos) [with TTarget = VirtualStream<char, Tag<Output_> >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   745 |         ModifiedString<TReadSeq const, ModView<TQualityExtractor> > quals(fragStore.readSeqStore[idCount]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1222 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   785 |         success = open(options.readFile, toCString(readFileNames[0]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:85:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:33:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  835 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  862 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   340 |     return TRevComp(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   936 |             _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  140 |             _host(std::forward<THost_>(host)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:740:27:   required from ‘void seqan::write(TTarget&, FragmentStore<TSpec, TConfig>&, Amos) [with TTarget = VirtualStream<char, Tag<Output_> >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   740 |         writeWrappedString(iter, fragStore.readSeqStore[idCount], 60);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1222 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::begin(const ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = ModView<QualityExtractor<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<const ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<QualityExtractor<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    98 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TSequence = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<QualityExtractor<SimpleType<unsigned char, Dna5Q_> > > >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:746:27:   required from ‘void seqan::write(TTarget&, FragmentStore<TSpec, TConfig>&, Amos) [with TTarget = VirtualStream<char, Tag<Output_> >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   746 |         writeWrappedString(iter, quals, 60);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1222 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:223:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1088 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1088 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1088 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1088 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   969 |         pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                       ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   696 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2081:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2081 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   872 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   872 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   969 |         pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                       ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   696 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2081:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2081 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   872 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   872 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1008 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1202 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   296 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   751 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1033 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1197 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:513:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   513 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2067:42:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2067 |                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1221:40:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1221 |         convertMatchesToGlobalAlignment(store, scoreType, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   395 |             data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:680:20:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   680 |     TFilterFinderR filterFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   932 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   975 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   696 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:941:46:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   941 |     finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   975 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   696 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2088:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2088 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   932 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   975 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   696 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1115 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2088:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2088 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:24:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, GapAnchor<long int>, void>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   529 |         _alignAndGetCigarString(cigar, md, contigInfix, readSeq, alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   905 |     alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     906 |             store.readSeqStore[alignedRead.readId], alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, GapAnchor<long int>, void>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   529 |         _alignAndGetCigarString(cigar, md, contigInfix, readSeq, alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   905 |     alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     906 |             store.readSeqStore[alignedRead.readId], alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:534:32:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, GapAnchor<long int>, void>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   534 |         _alignAndGetCigarString(cigar, md, contigInfix, reverseComplementString(readSeq), alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   905 |     alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     906 |             store.readSeqStore[alignedRead.readId], alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   663 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   458 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:811:66:   required from ‘void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String<SimpleType<unsigned char, Iupac_>, Alloc<> >; TQual = String<char, Alloc<> >; TRead = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   811 |     typename Iterator<TRead const, Standard>::Type sIt    = begin(read, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:31:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   936 |             _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24:   required from ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   398 |             appendValue(indexText(indexL), readSetL[j]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   859 |             appendValue(indexText(index), store.readSeqStore[j]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:24:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGaps2 = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<int> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35:   required from ‘void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContigInfix = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   507 |     TErrors mdErrors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:534:32:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:654:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   654 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2241:41:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  2241 |                     TMyersFinderRev     myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   793 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     794 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   852 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   852 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:654:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   654 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   852 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:989:66:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   989 |     typename Size<TFinder>::Type const columns = length(container(finder)) + state.leftClip;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                         ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1181 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1535 |         if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AlignTextBanded<FindInfix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1646 |     return find(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2177:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2177 |     while (find(myersFinder, readPrefix, state, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_interface.h:430:24:   required from ‘void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   430 |     goEnd(it, container(it));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:737:10:   required from ‘void seqan::goEnd(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   737 |     goEnd(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1537:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1537 |             goEnd(finder);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = AlignTextBanded<FindPrefix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1646 |     return find(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2245:32:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TSpec>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSCoreOptions<RazerSSpec<> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2245 |                     while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions<RazerSSpec<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSCoreOptions<RazerSSpec<> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  519 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  519 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  519 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  519 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSCoreOptions<RazerSSpec<> >; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   466 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  111 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  112 |         TMatches_,
      |         ~~~~~~~~~~
  113 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  114 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  115 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  116 |         TShape,
      |         ~~~~~~~
  117 |         TOptions,
      |         ~~~~~~~~~
  118 |         TCounts,
      |         ~~~~~~~~
  119 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSource = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56:   required from ‘typename seqan::Source<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Source<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   169 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24:   required from ‘typename seqan::GetValue<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename GetValue<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   193 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20:   required from ‘typename seqan::GetValue<const seqan::Proxy<seqan::IteratorProxy<TIterator> > >::Type seqan::getValue(const Proxy<IteratorProxy<TIterator> >&) [with TIterator = Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > >; typename GetValue<const Proxy<IteratorProxy<TIterator> > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   275 |     return getValue(iter(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37:   required from ‘typename seqan::Convert<TTarget, const seqan::Proxy<TSourceSpec> >::Type seqan::convertImpl(Convert<TTarget, T>, const Proxy<TSourceSpec>&) [with TTarget = char; T = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >; TSpec = IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > >; typename Convert<TTarget, const Proxy<TSourceSpec> >::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   151 |     return convert<TTarget>(getValue(source));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23:   required from ‘typename seqan::Convert<TTarget, TSource>::Type seqan::convert(const TSource&) [with TTarget = char; TSource = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >; typename Convert<TTarget, TSource>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   149 |     return convertImpl(Convert<TTarget, TSource>(), source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:241:45:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = const ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TContext>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56:   required from ‘typename seqan::Source<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Source<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   169 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24:   required from ‘typename seqan::GetValue<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename GetValue<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   193 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20:   required from ‘typename seqan::GetValue<const seqan::Proxy<seqan::IteratorProxy<TIterator> > >::Type seqan::getValue(const Proxy<IteratorProxy<TIterator> >&) [with TIterator = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > >; typename GetValue<const Proxy<IteratorProxy<TIterator> > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   275 |     return getValue(iter(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |            ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_alphabet_expansion.h:357:37:   required from ‘typename seqan::Convert<seqan::ModifiedAlphabet<THost, seqan::ModExpand<CHAR, TSpec> >, seqan::Proxy<TSpec2> >::Type seqan::convertImpl(Convert<ModifiedAlphabet<THost, ModExpand<CHAR, TSpec> >, T>, const Proxy<TSpec2>&) [with THost = SimpleType<unsigned char, Dna5Q_>; char CHAR = '-'; TSpec = Tag<Default_>; T = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >; TSpec2 = IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > >; typename Convert<ModifiedAlphabet<THost, ModExpand<CHAR, TSpec> >, Proxy<TSpec2> >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   357 |     return convert<TTarget>(getValue(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                             ~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23:   required from ‘typename seqan::Convert<TTarget, TSource>::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >; TSource = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >; typename Convert<TTarget, TSource>::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   149 |     return convertImpl(Convert<TTarget, TSource>(), source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_alphabet_expansion.h:92:59:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:17:   required from ‘typename seqan::Source<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Source<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   169 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24:   required from ‘typename seqan::GetValue<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename GetValue<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   193 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20:   required from ‘typename seqan::GetValue<const seqan::Proxy<seqan::IteratorProxy<TIterator> > >::Type seqan::getValue(const Proxy<IteratorProxy<TIterator> >&) [with TIterator = Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > >; typename GetValue<const Proxy<IteratorProxy<TIterator> > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   275 |     return getValue(iter(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37:   required from ‘typename seqan::Convert<TTarget, const seqan::Proxy<TSourceSpec> >::Type seqan::convertImpl(Convert<TTarget, T>, const Proxy<TSourceSpec>&) [with TTarget = char; T = Proxy<IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > > >; TSpec = IteratorProxy<Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > > >; typename Convert<TTarget, const Proxy<TSourceSpec> >::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   151 |     return convert<TTarget>(getValue(source));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:994:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   994 |     TConstSeqVIterator itVEnd = begin(seqV, Rooted()) + _min(seqVlength - 1, lowerDiagonal(band) + seqHlength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   612 |         _computeHammingDistance(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoringScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     613 |                                 dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<const seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(const ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; typename Container<const ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:314:32:   required from ‘typename seqan::Position<const seqan::ModifiedIterator<THost, seqan::Tag<seqan::ModReverse_> > >::Type seqan::position(const ModifiedIterator<THost, Tag<ModReverse_> >&) [with THost = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; typename Position<const ModifiedIterator<THost, Tag<ModReverse_> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   314 |         return length(container(host(me)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:675:73:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   675 |                      sequenceEntryForScore(scoringScheme, seqV, position(seqVBegin)), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                 ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:288:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  288 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56:   required from ‘typename seqan::Source<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename Source<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   169 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24:   required from ‘typename seqan::GetValue<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >; TGapAnchors = String<GapAnchor<int> >; typename GetValue<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   193 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20:   required from ‘typename seqan::GetValue<const seqan::Proxy<seqan::IteratorProxy<TIterator> > >::Type seqan::getValue(const Proxy<IteratorProxy<TIterator> >&) [with TIterator = Iter<Gaps<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<int> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int> > > > >; typename GetValue<const Proxy<IteratorProxy<TIterator> > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   275 |     return getValue(iter(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorEditDistance]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1210 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:30:   required from ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   278 |     TContainer cont(container(host(me)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:397:81:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSeqHValue = SimpleType<unsigned char, Dna5Q_>; TSeqVValue = SimpleType<unsigned char, Dna5Q_>; TSeqVIterator = ModifiedIterator<ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoringScheme = Score<int, Tag<Simple_> >; TDPCell = DPCell_<int, Tag<AffineGaps_> >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPFinalColumn_>, Tag<PartialColumnTop_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> >, Tag<AffineGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   397 |                          tmpSeqH, sequenceEntryForScore(scoringScheme, container(iter), position(iter)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                        ~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:891:38:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   891 |                         _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     892 |                                       sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     893 |                                       sequenceEntryForScore(scoringScheme, seqV, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     894 |                                       seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     895 |                                       MetaColumnDescriptor<DPFinalColumn, PartialColumnTop>(), dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1215 |                 writeAlignments(bamFile, store, func);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1301 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1345 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   257 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   519 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   519 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   318 |     class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   519 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   889 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   924 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   150 |         assign(*this, source_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   519 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23:   required from ‘void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource1 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TSource2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   511 |         valueConstruct(target_begin, std::move<decltype(*source_begin)>(*source_begin));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1055 |     _arrayConstructMoveDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1064 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSCoreOptions<RazerSSpec<> >, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  1683 |         arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Tag<Nothing_>, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSCoreOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   235 |     int error = _mapReads(store, stats, (RazerSCoreOptions<TSpec>&)options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:   866 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSCoreOptions<seqan::RazerSSpec<> >, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&&)’ first required here
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:993:51,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1011:66,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1021:53,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 73%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/param_tabs.cpp
[ 73%] Linking CXX executable ../../bin/razers3
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3  -lrt -lz -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 73%] Built target razers3
make  -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 75%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:6:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1035 |     return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = char*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     if (!loadContigs(store, toCString(referenceFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1035 |     return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = char*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     if (!loadContigs(store, toCString(referenceFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1035 |     return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = char*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     if (!loadContigs(store, toCString(referenceFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1035 |     return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = char*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     if (!loadContigs(store, toCString(referenceFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   996 |         if (!open(seqFile, toCString(fileNameList[f])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1035 |     return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = char*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1043 |     return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     if (!loadContigs(store, toCString(referenceFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 75%] Linking CXX executable ../../bin/razers3_simulate_reads
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads  -lrt -lz -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 75%] Built target razers3_simulate_reads
make  -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 76%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:5:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:6:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:34,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    42 |     if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    42 |     if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    42 |     if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    42 |     if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    42 |     if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 76%] Linking CXX executable ../../bin/razers3_quality2prob
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob  -lrt -lz -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 76%] Built target razers3_quality2prob
make  -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 78%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:27:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TSource = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:702:11:   required from ‘void seqan::assignValue(T&, TPos, const TValue&) [with T = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TPos = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   702 |     assign(value(me, pos), _value);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/property_map_generic.h:186:16:   required from ‘typename seqan::EnableIf<seqan::Is<seqan::PropertyMapConcept<TString> >, void>::Type seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; typename EnableIf<Is<PropertyMapConcept<TString> >, void>::Type = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   186 |     assignValue(pm, _getId(d), val);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_base.h:191:23:   required from ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>& registerRead(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   191 |         assignProperty(me.vertexCargo, vd, new_cargo);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_construction.h:82:59:   required from ‘void construct(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, const seqan::String<seqan::Pair<TPosition, seqan::String<TString> > >&, const seqan::FragmentStore<TSpec, TConfig>&, TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:    82 |                     TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter)));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:217:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   217 |     construct(rgraph, candidates, fragStore, options.contig);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>& GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>::operator=(const GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  118 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph.h:32,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_base.h:44:5: note: because ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>’ has user-provided ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::GraphCargo(const GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int]’
   44 |     GraphCargo(GraphCargo const& other)
      |     ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> >(seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> >(unsigned int const&, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> >(seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> >(unsigned int const&, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<long, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> >(seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> const&)long’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<long, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> >(long const&, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::PrefixSegment> const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<long, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> >(seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> const&)long’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<long, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> >(long const&, seqan::Segment<seqan::String<char, seqan::Alloc<void> >, seqan::SuffixSegment> const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<long, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)long’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<long, seqan::String<char, seqan::Alloc<void> > >(long const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 78%] Linking CXX executable ../../bin/rep_sep
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36,
    inlined from ‘registerRead’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_base.h:187:41,
    inlined from ‘construct’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_construction.h:82:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘construct’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 78%] Built target rep_sep
make  -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 78%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   337 |         openRes = open(inFile, toCString(options.inFastxPath));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   337 |         openRes = open(inFile, toCString(options.inFastxPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   337 |         openRes = open(inFile, toCString(options.inFastxPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   337 |         openRes = open(inFile, toCString(options.inFastxPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:347:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         openRes = open(outFile, toCString(options.outPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   337 |         openRes = open(inFile, toCString(options.inFastxPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:347:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         openRes = open(outFile, toCString(options.outPath));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:468:23:   required from ‘typename seqan::EnableIf<seqan::Not<seqan::IsSameType<TFwdIterator, seqan::FormattedFile<seqan::Tag<seqan::TagFastq_>, seqan::Tag<seqan::Output_> > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<Not<IsSameType<TFwdIterator, FormattedFile<Tag<TagFastq_>, Tag<Output_> > > >, void>::Type = void; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   468 |     writeWrappedString(target, seq, lineLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag<TUsage>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TagSpec = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   423 |     writeRecord(file.iter, meta, seq, qual, Tag<TagSpec>(), context(file).options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector<TTagList>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   506 |         writeRecord(file, meta, seq, qual, TFormat());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Is<seqan::OutputStreamConcept<typename TFile::TStream> >, seqan::IsSequence<TQualString> >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Output_> >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Is<OutputStreamConcept<typename TFile::TStream> >, IsSequence<TQualString> >, void>::Type = void; typename TFile::TStream = VirtualStream<char, Tag<Output_>, std::char_traits<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   519 |     writeRecord(file, meta, seq, qual, file.format);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   424 |             writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TSequence = Segment<String<char, Alloc<> >, InfixSegment>; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:475:23:   required from ‘typename seqan::EnableIf<seqan::Not<seqan::IsSameType<TFwdIterator, seqan::FormattedFile<seqan::Tag<seqan::TagFastq_>, seqan::Tag<seqan::Output_> > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<Not<IsSameType<TFwdIterator, FormattedFile<Tag<TagFastq_>, Tag<Output_> > > >, void>::Type = void; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   475 |     writeWrappedString(target, qual, lineLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag<TUsage>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TagSpec = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   423 |     writeRecord(file.iter, meta, seq, qual, Tag<TagSpec>(), context(file).options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector<TTagList>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   506 |         writeRecord(file, meta, seq, qual, TFormat());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Is<seqan::OutputStreamConcept<typename TFile::TStream> >, seqan::IsSequence<TQualString> >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Output_> >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Is<OutputStreamConcept<typename TFile::TStream> >, IsSequence<TQualString> >, void>::Type = void; typename TFile::TStream = VirtualStream<char, Tag<Output_>, std::char_traits<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   519 |     writeRecord(file, meta, seq, qual, file.format);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   424 |             writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:468:23:   required from ‘typename seqan::EnableIf<seqan::Not<seqan::IsSameType<TFwdIterator, seqan::FormattedFile<seqan::Tag<seqan::TagFastq_>, seqan::Tag<seqan::Output_> > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<Not<IsSameType<TFwdIterator, FormattedFile<Tag<TagFastq_>, Tag<Output_> > > >, void>::Type = void; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   468 |     writeWrappedString(target, seq, lineLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag<TUsage>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TagSpec = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   423 |     writeRecord(file.iter, meta, seq, qual, Tag<TagSpec>(), context(file).options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector<TTagList>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   506 |         writeRecord(file, meta, seq, qual, TFormat());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Is<seqan::OutputStreamConcept<typename TFile::TStream> >, seqan::IsSequence<TQualString> >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Output_> >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Is<OutputStreamConcept<typename TFile::TStream> >, IsSequence<TQualString> >, void>::Type = void; typename TFile::TStream = VirtualStream<char, Tag<Output_>, std::char_traits<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   519 |     writeRecord(file, meta, seq, qual, file.format);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   424 |             writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23:   required from ‘void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TSequence = Segment<String<char, Alloc<> >, InfixSegment>; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   489 |     TIter iter = begin(seq, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:475:23:   required from ‘typename seqan::EnableIf<seqan::Not<seqan::IsSameType<TFwdIterator, seqan::FormattedFile<seqan::Tag<seqan::TagFastq_>, seqan::Tag<seqan::Output_> > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<Not<IsSameType<TFwdIterator, FormattedFile<Tag<TagFastq_>, Tag<Output_> > > >, void>::Type = void; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   475 |     writeWrappedString(target, qual, lineLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag<TUsage>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TagSpec = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   423 |     writeRecord(file.iter, meta, seq, qual, Tag<TagSpec>(), context(file).options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20:   required from ‘void seqan::writeRecord(FormattedFile<Tag<TagFastq_>, Tag<Output_>, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector<TTagList>&) [with TSpec = void; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   506 |         writeRecord(file, meta, seq, qual, TFormat());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Is<seqan::OutputStreamConcept<typename TFile::TStream> >, seqan::IsSequence<TQualString> >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Output_> >; TIdString = String<char, Alloc<> >; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Is<OutputStreamConcept<typename TFile::TStream> >, IsSequence<TQualString> >, void>::Type = void; typename TFile::TStream = VirtualStream<char, Tag<Output_>, std::char_traits<char> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   519 |     writeRecord(file, meta, seq, qual, file.format);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   424 |             writeRecord(outFile, id, infix(seqCopy, infixBegin, infixEnd), infix(quals, infixBegin, infixEnd));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 79%] Linking CXX executable ../../bin/sak
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 79%] Built target sak
make  -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 79%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Bam_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   257 |         _open(*this, fileName, openMode, True());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:173:59:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   173 |         BamFileIn bamIO(toCString(options.samFileNames[i]));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                           ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:42:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |     SeqFileIn seqStream(toCString(options.readNameFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                            ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |     SeqFileIn seqStream(toCString(options.readNameFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                            ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::Bam_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:173:59:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   173 |         BamFileIn bamIO(toCString(options.samFileNames[i]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                           ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   145 |     SeqFileIn seqStream(toCString(options.readNameFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                                            ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |     SeqFileIn seqStream(toCString(options.readNameFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                            ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = True]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14:   required from ‘seqan::FormattedFile<TFileFormat, TDirection, TSpec>::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag<seqan::TagFastq_>; TDirection = seqan::Tag<seqan::Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   257 |         _open(*this, fileName, openMode, True());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |     SeqFileIn seqStream(toCString(options.readNameFileName));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                            ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘_parseSamFiles(seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, SamToGasicOptions const&)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 81%] Linking CXX executable ../../bin/sam2matrix
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Built target sam2matrix
make  -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:36:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::String<char, seqan::Alloc<void> >, seqan::AdaptorIterator<char*, seqan::Tag<seqan::Default_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> >, seqan::AdaptorIterator<char*, seqan::Tag<seqan::Default_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::String<char, seqan::Alloc<void> >, seqan::AdaptorIterator<char*, seqan::Tag<seqan::Default_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> >, seqan::AdaptorIterator<char*, seqan::Tag<seqan::Default_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 81%] Linking CXX executable ../../bin/samcat
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Built target samcat
make  -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/g++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/parallel/base.h:36,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/parallel/algorithm:36,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:282:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   282 |     index(searcher);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:323:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   323 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:282:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   282 |     index(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:323:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   323 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:405:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   405 |     index(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:449:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   449 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:405:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   405 |     index(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:449:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   449 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:57:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   508 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:536:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   536 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   508 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:536:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   536 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<std::basic_ofstream<char>, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10:   required from ‘void _writeRecord(Writer<TDb, TDbQuery, TSpec>&, const TString1&, const TString2&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >; TSpec = seqan::Tag<Search_>; TString1 = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   132 |     write(writer.outputIt, id1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:150:17:   required from ‘void _write(Writer<TDb, TDbQuery, TSpec>&, typename seqan::Size<TContainer>::Type, typename seqan::Size<TFwdIterator>::Type) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >; TSpec = seqan::Tag<Search_>; typename seqan::Size<TContainer>::Type = unsigned int; typename seqan::Size<TFwdIterator>::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   150 |     _writeRecord(writer, writer.db.ids[dbId], writer.query.ids[queryId]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:98:15:   required from ‘void Writer<TDb, TDbQuery, TSpec>::operator()(typename seqan::Size<TContainer>::Type, typename seqan::Size<TFwdIterator>::Type) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >; TSpec = seqan::Tag<Search_>; typename seqan::Size<TContainer>::Type = unsigned int; typename seqan::Size<TFwdIterator>::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    98 |         _write(*this, dbId, queryId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:142:13:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   142 |     delegate(dbId, queryId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   508 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<std::basic_ofstream<char>, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:98:15:   required from ‘void Writer<TDb, TDbQuery, TSpec>::operator()(typename seqan::Size<TContainer>::Type, typename seqan::Size<TFwdIterator>::Type) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >; TSpec = seqan::Tag<Search_>; typename seqan::Size<TContainer>::Type = unsigned int; typename seqan::Size<TFwdIterator>::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    98 |         _write(*this, dbId, queryId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:142:13:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   142 |     delegate(dbId, queryId);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   810 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   508 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   524 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   456 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   552 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   302 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>; seqan::Nothing = seqan::Tag<seqan::Nothing_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   330 |     execute(searcher);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   516 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
[ 82%] Linking CXX executable ../../bin/s4_search
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 82%] Built target s4_search
make  -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 82%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/g++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/parallel/base.h:36,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/parallel/algorithm:36,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   355 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   264 |     index(joiner);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:319:37:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   319 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   279 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   355 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:332:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   332 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   279 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   355 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:357:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   357 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   279 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<HugeDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   355 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:370:37:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   370 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   344 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   264 |     index(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  764 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   279 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  888 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = seqan::Tag<SmallDb_>]’
   88 |     Index(Index const & other) :
      |     ^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |     _historyClear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 1731 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  2236 |         _clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   312 |     clear(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   212 |             goRoot(*this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2230 |         value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:57:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   791 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<std::basic_ofstream<char>, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10:   required from ‘void _writeRecord(Writer<TDb, TDbQuery, TSpec>&, const TString1&, const TString2&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TSpec = seqan::Tag<Join_>; TString1 = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   132 |     write(writer.outputIt, id1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:197:21:   required from ‘bool close(Writer<TDb, TDb, seqan::Tag<Join_> >&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   197 |         _writeRecord(writer, writer.db.ids[dbId], writer.db.ids[dbId]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:293:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   293 |     close(writer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   311 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   791 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:349:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   349 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   377 |     _historyPush(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1880 |         if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27:   required from ‘bool seqan::_pushState(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31:   required from ‘void seqan::_find(Finder_<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1311 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   611 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  630 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  134 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   791 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:   311 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<std::basic_ofstream<char>, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10:   required from ‘void _writeRecord(Writer<TDb, TDbQuery, TSpec>&, const TString1&, const TString2&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TDbQuery = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>; TSpec = seqan::Tag<Join_>; TString1 = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   132 |     write(writer.outputIt, id1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:197:21:   required from ‘bool close(Writer<TDb, TDb, seqan::Tag<Join_> >&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   197 |         _writeRecord(writer, writer.db.ids[dbId], writer.db.ids[dbId]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:293:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   293 |     close(writer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   311 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1515 |     typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   791 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Tag<seqan::Nothing_>; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:349:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   349 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<Tag<StringOfMaxSize256_> > >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   336 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   361 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   374 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   302 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   726 |         return indexCreate(index, fibre);                            // and create table
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   195 |     indexRequire(index, FibreSA());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   605 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   286 |     execute(joiner);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   323 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
[ 84%] Linking CXX executable ../../bin/s4_join
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 84%] Built target s4_join
make  -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 85%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:23:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TContext>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TContext>::Type>::Type = long unsigned int; typename Value<TContext>::Type = Fragment<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   571 |                     findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   678 |     matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:20:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, Graph<Alignment<TStringSet, TCargo, TSpec2> >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; FrequencyCounting = const Tag<FrequencyCounting_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   191 |     matchRefinement(matches,strSet,outGraph);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:24:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, Tag<Default_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   178 |     buildAlignmentGraph(matches, g, FrequencyCounting());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   281 |         evaluateAlignment(msaOpt);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1667 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1679 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1701 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14:   required from ‘bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    46 |     if (!open(inFile, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19:   required from ‘void customizedMsaAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    66 |     _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   290 |         customizedMsaAlignment(msaOpt);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::TagScoreMatrixFile_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79,
    inlined from ‘seqan::read<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_>, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9,
    inlined from ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadScoreMatrix<int, seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> >(seqan::Score<int, seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Tag<seqan::Default_> > >&, char const*)bool [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned long’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(unsigned long const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::read<std::basic_ifstream<char, std::char_traits<char> >, seqan::Fragment<unsigned long, seqan::ExactFragment<seqan::Tag<seqan::Default_> > >, seqan::Alloc<void>, int, seqan::Alloc<void>, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >(std::basic_ifstream<char, std::char_traits<char> >&, seqan::String<seqan::Fragment<unsigned long, seqan::ExactFragment<seqan::Tag<seqan::Default_> > >, seqan::Alloc<void> >&, seqan::String<int, seqan::Alloc<void> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::Tag<seqan::TCoffeeLib_>)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::read<std::basic_ifstream<char, std::char_traits<char> >, seqan::Fragment<unsigned long, seqan::ExactFragment<seqan::Tag<seqan::Default_> > >, seqan::Alloc<void>, int, seqan::Alloc<void>, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >(std::basic_ifstream<char, std::char_traits<char> >&, seqan::String<seqan::Fragment<unsigned long, seqan::ExactFragment<seqan::Tag<seqan::Default_> > >, seqan::Alloc<void> >&, seqan::String<int, seqan::Alloc<void> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::Tag<seqan::TCoffeeLib_>)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 85%] Linking CXX executable ../../bin/seqan_tcoffee
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 85%] Built target seqan_tcoffee
make  -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp:37:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:45,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/unique_ptr.h:38,
                 from /usr/include/c++/14/memory:78,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:48:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   88 |     public std::unary_function<Pair<TSize, TSize>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   99 |     public std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1618:57:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1618 |     TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigId = unsigned int; TPos = int; TNum = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   145 |             printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   116 |     if (!open(seqFileOut, options.outputFileConsensus.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigId = unsigned int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |             printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                       ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigId = unsigned int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   145 |             printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h: In instantiation of ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1138 |         _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  404 |             for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2)
      |                                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   116 |     if (!open(seqFileOut, options.outputFileConsensus.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigId = unsigned int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   145 |             printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55:   required from ‘void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream<char>; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1628 |         else if (convert<Dna5>(*cit) == convert<Dna5>(*it))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                                       ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23:   required from ‘void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigId = unsigned int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1777 |             _printRead(stream, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   145 |             printAlignment(out, layout, store, /*contigID=*/contigID, /*beginPos=*/0, /*endPos=*/endPos, 0, 100);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Output_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   116 |     if (!open(seqFileOut, options.outputFileConsensus.c_str()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   340 |     return TRevComp(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   936 |             _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1109 |     writeAlignments(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1118 |     writeRecords(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   153 |         writeRecords(out, store);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  140 |             _host(std::forward<THost_>(host)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:223:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   223 |     if (!open(seqFileIn, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:223:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:370:17:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   370 |     _patternInit(filterPattern, maxErrorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  518 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = unsigned int; TTag = Standard_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:395:33:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   395 |         TReadGapsIter itR = iter(readGaps, windowInfo.readAliBeginPos, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1138 |         _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:408:48:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   408 |                     std::cerr << convert<char>(*itR2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                                ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1138 |         _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:    98 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:811:66:   required from ‘void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String<SimpleType<unsigned char, Iupac_>, Alloc<> >; TQual = String<char, Alloc<> >; TRead = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   811 |     typename Iterator<TRead const, Standard>::Type sIt    = begin(read, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                             ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:31:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   936 |             _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1109 |     writeAlignments(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1118 |     writeRecords(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   153 |         writeRecords(out, store);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:223:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   223 |     if (!open(seqFileIn, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   969 |         pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                       ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         while (find(filterFinder, filterPattern, maxErrorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   376 |         appendValue(seqs, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   369 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:279:37:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   279 |         for (TReadSeqIter it = begin(store.readSeqStore[el.readId]),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1020:13:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1020 |             _getReadAsProfile(contigProfile, contigAlignedReads[0]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:504:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   504 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:280:33:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   280 |                      itEnd = end(store.readSeqStore[el.readId]); it != itEnd; ++it, ++itP)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1020:13:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1020 |             _getReadAsProfile(contigProfile, contigAlignedReads[0]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:408:48:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   408 |                     std::cerr << convert<char>(*itR2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1138 |         _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = unsigned int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = unsigned int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = unsigned int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:930:19:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::_endContig(unsigned int) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   930 |         insertGaps(contigGaps, gaps[i].i1, gaps[i].i2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:697:5:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   697 |     _endContig(contigID);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:572:29:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, GapAnchor<long int>, void>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   572 |         errors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   905 |     alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     906 |             store.readSeqStore[alignedRead.readId], alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1109 |     writeAlignments(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1118 |     writeRecords(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   153 |         writeRecords(out, store);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  205 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   88 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   140 |             _host(std::forward<THost_>(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   340 |     return TRevComp(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   936 |             _fillBamSeqAndQual(record.seq, record.qual, reverseComplementString(store.readSeqStore[alignedRead.readId]));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1109 |     writeAlignments(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:  1118 |     writeRecords(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:   153 |         writeRecords(out, store);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:229:32:   required from ‘seqan::Finder<THaystack, seqan::Pigeonhole<TSpec> >::Finder(THaystack&) [with THaystack = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   229 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:376:23:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   376 |         TFilterFinder filterFinder(*it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   932 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   975 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         while (find(filterFinder, filterPattern, maxErrorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:941:46:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   941 |     finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   975 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         while (find(filterFinder, filterPattern, maxErrorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(String<TEmission>&, const Graph<TSpec>&, const TPropertyMap&, TValue) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TContext>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TContext>::Type>::Type = long unsigned int; typename Value<TContext>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   571 |                     findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   678 |     matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TAlphabetV, TSpecV>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; FractionalScore = const Tag<FractionalScore_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   136 |     matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TAlphabetV, TSpecV>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; TScore = Score<int, Tag<Simple_> >; ReScore = const Tag<ReScore_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   272 |     buildAlignmentGraph(matches, scores, outGraph, FractionalScore() );
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:384:24:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   384 |     buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1667 |         act_prop = property(pm, act_knot);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1679 |             next_prop = property(pm, targetVertex(it));
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 1701 |                 next_prop = property(pm, targetVertex(it));
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  288 |     IntervalTreeNode(IntervalTreeNode const & other) :
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:295:23:   required from ‘bool seqan::alignmentGraphToFragmentStore(TFragmentStore&, const Graph<Alignment<StringSet<TSequence, TSetSpec>, TCargo, TSpec> >&, const Graph<Undirected<double> >&, const String<unsigned int, Alloc<> >&, const String<unsigned int, Alloc<> >&, unsigned int, bool) [with TFragmentStore = FragmentStore<>; TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TCargo = unsigned int; TSetSpec = Dependent<Tag<TagInsist_> >; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   295 |             insertGaps(gaps, from - store.alignedReadStore[*itS].beginPos, fLen);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:427:34:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   427 |     alignmentGraphToFragmentStore(store, graph, distances, component, order, numComponents,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     428 |                                   /*logging=*/(options.verbosity >= 3));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   205 |     return TProxy(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   250 |     return value(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39:   required from ‘unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<ModifiedString<ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   209 |             if ((TVal1)*it1 == (TVal2)*it2)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                       ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:572:29:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String<CigarElement<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, GapAnchor<long int>, void>; TReadSeq = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TErrors = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   572 |         errors = getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27:   required from ‘void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore<TSpec, TConfig>&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TAlignQuality = AlignQualityStoreElement<signed char, void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   905 |     alignAndGetCigarString(record.cigar, record.qual, store.contigStore[alignedRead.contigId],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     906 |             store.readSeqStore[alignedRead.readId], alignedRead, errors, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24:   required from ‘void seqan::writeAlignments(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1076 |         setPrimaryMatch(record, store, alignedRead, *alignQualityPtr, functor, secondary);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TBamIOFunctor = BamAlignFunctorDefault]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1109 |     writeAlignments(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17:   required from ‘void seqan::writeRecords(FormattedFile<Tag<Bam_>, Tag<Output_>, TSpec>&, FragmentStore<TSpec, TConfig>&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1118 |     writeRecords(bamFile, store, functor);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   153 |         writeRecords(out, store);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
   89 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::ModifiedString<seqan::ModifiedString<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Tag<seqan::ModReverse_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   352 |         appendValue(superSet, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   376 |         appendValue(seqs, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   376 |         appendValue(seqs, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:162:56:   required from ‘typename seqan::Source<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Source<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   162 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:183:24:   required from ‘typename seqan::GetValue<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename GetValue<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   183 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:950:54:   required from ‘void seqan::write(TTarget&, const Gaps<TSource, TSpec>&) [with TTarget = Iter<std::basic_ostream<char>, StreamIterator<Tag<Output_> > >; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   950 |             writeValue(target, convert<char>(getValue(begin_)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:965:10:   required from ‘TTarget& seqan::operator<<(TTarget&, const Gaps<TSource, TSpec>&) [with TTarget = std::basic_ostream<char>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   965 |     write(it, gaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:363:40:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   363 |             std::cerr << "READ GAPS\t" << readGaps << "\n";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1067:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1067 |         _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:513:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   513 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1610:30:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps<seqan::String<seqan::ProfileChar<typename seqan::BaseAlphabet<typename seqan::Value<typename seqan::Value<typename TFragmentStore::TReadSeqStore>::Type>::Type>::Type> > >&, seqan::Gaps<typename seqan::Value<typename TFragmentStore::TReadSeqStore>::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::Dna5_> >, seqan::Alloc<> >; typename seqan::BaseAlphabet<typename seqan::Value<typename seqan::Value<typename TFragmentStore::TReadSeqStore>::Type>::Type>::Type = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Value<typename seqan::Value<typename TFragmentStore::TReadSeqStore>::Type>::Type = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; typename seqan::Value<typename TFragmentStore::TReadSeqStore>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TAlignedReadIter = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>*]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1610 |                     insertGap(anchorReadGaps, readGapsPos++);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1321:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1321 |         _updateAlignments(windowBegin, windowEnd, profilePart, profileGaps, readGaps, info, windowInfo, it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   466 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2236:27:   required from ‘void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement<long int, GapAnchor<long int>, void>*; TPos = long int; TSize = long int; TReadSeqStore = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  2236 |                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2321:40:   required from ‘void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps<Tag<Nothing_>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TContigGapsPW = Gaps<Tag<Nothing_>, AnchorGaps<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment> > >; TReadGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedReadIter = AlignedReadStoreElement<long int, GapAnchor<long int>, void>*; TReadSeqStore = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  2321 |                 _alignedReadsInsertGaps(overlappingAlignedReadsBegin1, overlappingAlignedReadsEnd1, insPos, blkLen, readSeqStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2437:31:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  2437 |         _twoWayMergeAlignments(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^
    2438 |                 contigGapsGlobal, contigGapsPW, readGaps,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2439 |                 firstOverlapOld, lastOverlapOld, firstOverlapNew, it,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2440 |                 store.readSeqStore);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                 ~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TForwardIter = Iter<VirtualStream<char, Tag<Input_> >, StreamIterator<Tag<Input_> > >; TFormat = TagSelector<TagList<Tag<Bam_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   337 |         convertPairWiseToGlobalAlignment(store, contigAnchorGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   361 |     readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   373 |     readRecords(store, bamFile, FragStoreImportFlags());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:261:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   261 |         readRecords(store, bamFileIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:229:32:   required from ‘seqan::Finder<THaystack, seqan::Pigeonhole<TSpec> >::Finder(THaystack&) [with THaystack = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   229 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:376:23:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   376 |         TFilterFinder filterFinder(*it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:162:17:   required from ‘typename seqan::Source<const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::source(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Source<const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   162 |     return begin(source(*me.data_container), Rooted()) + me.current.seqPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:183:24:   required from ‘typename seqan::GetValue<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::getValue(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename GetValue<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = ModifiedAlphabet<SimpleType<unsigned char, Dna5Q_>, ModExpand<'-'> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   183 |     else return *source(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:950:54:   required from ‘void seqan::write(TTarget&, const Gaps<TSource, TSpec>&) [with TTarget = Iter<std::basic_ostream<char>, StreamIterator<Tag<Output_> > >; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   950 |             writeValue(target, convert<char>(getValue(begin_)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:965:10:   required from ‘TTarget& seqan::operator<<(TTarget&, const Gaps<TSource, TSpec>&) [with TTarget = std::basic_ostream<char>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   965 |     write(it, gaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:363:40:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   363 |             std::cerr << "READ GAPS\t" << readGaps << "\n";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1067:9:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1067 |         _computeReadClippingInfo(windowInfo, *it, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:165:9:   required from ‘seqan::Gaps<TSequence, seqan::AnchorGaps<TGapAnchors> >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag<seqan::Nothing_>; TGapAnchors = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   165 |         data_gaps(anchors),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2393:29:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2393 |         TContigGapsPW       contigGapsPW(/*contigInfix, */gaps[it->id - offsetRecord]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TForwardIter = Iter<VirtualStream<char, Tag<Input_> >, StreamIterator<Tag<Input_> > >; TFormat = TagSelector<TagList<Tag<Bam_>, TagList<Tag<Sam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   337 |         convertPairWiseToGlobalAlignment(store, contigAnchorGaps);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   361 |     readRecords(store, ctx, directionIterator(bamFile, Input()), format(bamFile), importFlags);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16:   required from ‘void seqan::readRecords(FragmentStore<TSpec, TConfig>&, FormattedFile<Tag<Bam_>, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig<void>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   373 |     readRecords(store, bamFile, FragStoreImportFlags());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:261:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   261 |         readRecords(store, bamFileIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   352 |         appendValue(superSet, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   352 |         appendValue(superSet, store.readSeqStore[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:463:41:   required from ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<const StringSet<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Dependent<Tag<TagInsist_> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna5Q_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   463 |     TSize seqCount = countSequences(host(pattern));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                     ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:370:17:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&, const std::vector<unsigned int>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   370 |     _patternInit(filterPattern, maxErrorRate);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::buildAllToAllOverlapInfos(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   334 |     buildAllToAllOverlapInfos(infos, readIDs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34:   required from ‘void seqan::OverlapInfoComputation_<TFragmentStore>::run(std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   163 |         buildAllToAllOverlapInfos(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   160 |     ovlInfoHelper.run(overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   86 |     class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<const seqan::StringSet<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, True, True, True> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   required from ‘TScoreValue seqan::globalAlignment(Align<TSource, TSpec>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequence = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:    99 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     100 |                                             scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24:   required from ‘bool seqan::Overlapper_<TFragments, TSequence>::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String<seqan::Fragment<> >; TSequence = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   354 |         globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::computeOverlaps(TFragments&, seqan::String<int>&, seqan::Graph<seqan::Undirected<double> >&, const TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String<seqan::Fragment<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   138 |         if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     139 |                                       OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     140 |                                                         it->pos1 + it->numErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   370 |     computeOverlaps(fragments, scores, distances, store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, True, True, True> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   required from ‘TScoreValue seqan::globalAlignment(Align<TSource, TSpec>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequence = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    99 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     100 |                                             scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24:   required from ‘bool seqan::Overlapper_<TFragments, TSequence>::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String<seqan::Fragment<> >; TSequence = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   354 |         globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::computeOverlaps(TFragments&, seqan::String<int>&, seqan::Graph<seqan::Undirected<double> >&, const TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String<seqan::Fragment<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   138 |         if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     139 |                                       OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     140 |                                                         it->pos1 + it->numErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   370 |     computeOverlaps(fragments, scores, distances, store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, True, True, True> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   required from ‘TScoreValue seqan::globalAlignment(Align<TSource, TSpec>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequence = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    99 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     100 |                                             scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24:   required from ‘bool seqan::Overlapper_<TFragments, TSequence>::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String<seqan::Fragment<> >; TSequence = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   354 |         globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::computeOverlaps(TFragments&, seqan::String<int>&, seqan::Graph<seqan::Undirected<double> >&, const TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String<seqan::Fragment<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   138 |         if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     139 |                                       OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     140 |                                                         it->pos1 + it->numErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   370 |     computeOverlaps(fragments, scores, distances, store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, True, True, True> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   required from ‘TScoreValue seqan::globalAlignment(Align<TSource, TSpec>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequence = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    99 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(align, 1)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     100 |                                             scoringScheme, TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24:   required from ‘bool seqan::Overlapper_<TFragments, TSequence>::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String<seqan::Fragment<> >; TSequence = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   354 |         globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::computeOverlaps(TFragments&, seqan::String<int>&, seqan::Graph<seqan::Undirected<double> >&, const TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String<seqan::Fragment<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   138 |         if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     139 |                                       OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     140 |                                                         it->pos1 + it->numErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   370 |     computeOverlaps(fragments, scores, distances, store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, True, True, True> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, True, True, True> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, True, True, True>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24:   required from ‘bool seqan::Overlapper_<TFragments, TSequence>::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String<seqan::Fragment<> >; TSequence = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   354 |         globalAlignment(align, scoringScheme, alignConfig, lDiag, uDiag, Gotoh());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::computeOverlaps(TFragments&, seqan::String<int>&, seqan::Graph<seqan::Undirected<double> >&, const TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String<seqan::Fragment<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   138 |         if (overlapper.computeOverlap(ovl, frags, store.readSeqStore[it->seq0], store.readSeqStore[it->seq1],
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     139 |                                       OverlapCandidate_(it->seq0, it->seq1, it->pos1 - it->numErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     140 |                                                         it->pos1 + it->numErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5:   required from ‘void seqan::ConsensusBuilder_<TFragmentStore>::run(TFragmentStore&, const std::vector<seqan::OverlapInfo_>&) const [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   370 |     computeOverlaps(fragments, scores, distances, store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20:   required from ‘void seqan::ConsensusAligner_<TFragmentStore>::run() [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   170 |     consBuilder.run(store, overlapInfos);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16:   required from ‘void seqan::consensusAlignment(FragmentStore<TSpec, TConfig>&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   141 |     aligner.run();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     consensusAlignment(store, caOptions);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:382:27:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<False, True, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSeqHValue = ConsensusScoreSequenceEntry<String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TScoringScheme = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TDPCell = DPCell_<int, Tag<LinearGaps_> >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPInitialColumn_>, Tag<FullColumn_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<False, True, True, False> >, Tag<LinearGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   382 |     for (; iter != seqEnd - 1; ++iter)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:453:18:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<False, True, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSeqHValue = ConsensusScoreSequenceEntry<String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TScoringScheme = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPInitialColumn_>, Tag<FullColumn_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<False, True, True, False> >, Tag<LinearGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   453 |     _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     454 |                   scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:515:18:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWise&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<False, True, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TBand = DPBandConfig<Tag<BandOff_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<False, True, True, False> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWise = Tag<NavigateColumnWise_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     516 |                   sequenceEntryForScore(scoringScheme, seqH, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     517 |                   sequenceEntryForScore(scoringScheme, seqV, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     518 |                   seqVBegin, seqVEnd, scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     519 |                   MetaColumnDescriptor<DPInitialColumn, FullColumn>(), dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TBandSwitch = Tag<BandOff_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<False, True, True, False> >; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TTraceSegment, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> >; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOff_> >; TFreeEndGaps = FreeEndGaps_<False, True, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:639:20:   required from ‘void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, const TAlgoTag&) [with TProfileGaps = Gaps<String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> >, Tag<ArrayGaps_> >; TReadGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >; TConsensusScore = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TAlignConfig = AlignConfig<false, true, false, true>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   639 |     globalAlignment(profileGaps, readGaps, consScore, alignConfig, /*lowerBand, upperBand, */tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:657:36:   required from ‘void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps<String<ProfileChar<SimpleType<unsigned char, Dna5_> >, Alloc<> >, Tag<ArrayGaps_> >; TReadGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >; TConsensusScore = Score<int, WeightedConsensusScore<Score<int, Tag<ProfileSeqFracScore_> >, Score<int, Tag<ProfileSeqScore_> > > >; TAlignConfig = AlignConfig<false, true, false, true>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   657 |             _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     658 |                                     NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                     ~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1209:36:   required from ‘void seqan::AnsonMyersRealignmentRound_<TFragmentStore>::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1209 |             _readToProfileAlignment(profileGaps, readGaps, consScore, alignConfig, lowerBand, upperBand, linear);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18:   required from ‘void seqan::AnsonMyersRealigner_<TFragmentStore>::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         round.run(windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18:   required from ‘void seqan::reAlignment(FragmentStore<TSpec, TConfig>&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1801 |     realigner.run(contigID, windowBegin, windowEnd);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   314 |         reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Sam_>, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Sam_>, void> > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19,
    inlined from ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_readOneAlignment<void, seqan::FragmentStoreConfig<void>, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > >(seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> >&, seqan::StringSet<seqan::String<seqan::GapAnchor<long>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::String<seqan::MatchMateInfo_<unsigned int>, seqan::Alloc<void> >&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::TagSelector<seqan::TagList<seqan::Tag<seqan::Bam_>, seqan::TagList<seqan::Tag<seqan::Sam_>, void> > > const&, seqan::FragStoreSAMContext<seqan::FragmentStore<void, seqan::FragmentStoreConfig<void> > >&, seqan::FragStoreImportFlags const&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 89%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 89%] Linking CXX executable ../../bin/seqcons2
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:164:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1136:19,
    inlined from ‘upgmaTree’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:803:12,
    inlined from ‘upgmaTree’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:892:14,
    inlined from ‘run’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:397:14:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘run’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 89%] Built target seqcons2
make  -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 90%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:33,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:33:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 90%] Linking CXX executable ../../bin/sgip
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:735:43,
    inlined from ‘_createUndir’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:358:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createUndir’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:736:29,
    inlined from ‘_createUndir’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:358:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createUndir’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:735:43,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:736:29,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addEdge’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:604:22,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:740:16,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 90%] Built target sgip
make  -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 92%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:32:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:33:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:35:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   88 |     public std::unary_function<Pair<TSize, TSize>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   99 |     public std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:53:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:356:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  356 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:405:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  405 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:420:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  420 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:468:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  468 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:481:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  481 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:504:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  504 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:523:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  523 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:545:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  545 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:54,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/pair_base.h: In instantiation of ‘seqan::Pair<T1, T2, TSpec>::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:5148:46:   required from ‘void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  5148 |                                              Pair<unsigned,TReadInf>(1,rInf)));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:971:74:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   971 |                     if(!options.realign) dumpShortIndelPolymorphismsBatch(fragmentStore, readCigars, fragmentStore.contigStore[0].seq, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, indelFileStream, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1412 |     int result = detectSNPs(options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/pair_base.h:120:53: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  120 |     Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {}
      |                                                     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18:   required from ‘bool loadGenomes(TGenomeSet&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<seqan::String<char, seqan::Alloc<> >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:    77 |         if (!open(seqFileIn, toCString(fileNameList[filecount])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   670 |     if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   679 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   661 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:4057:36:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4057 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:2477:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2477 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2478 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2479 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2480 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:986:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   986 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18:   required from ‘bool loadGenomes(TGenomeSet&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<seqan::String<char, seqan::Alloc<> >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:    77 |         if (!open(seqFileIn, toCString(fileNameList[filecount])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   670 |     if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:689:35:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TExpand> >::Type seqan::iter(const T&, TPos, const Tag<TExpand>&) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<const T, const Tag<TExpand> >::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   689 |     return begin(me, Tag<TTag>()) + pos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:669:16:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   669 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:451:22:   required from ‘bool seqan::isGap(const Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   451 |     return isGap(iter(gaps, clippedViewPos));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:4418:72:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  4418 |                 ((indelConsens[candidateViewPos].i1 & 7) == 6  && isGap(referenceGaps, candidateViewPos-refStart)))  // position in consensus is the same as in reference
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:2477:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2477 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2478 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2479 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2480 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:986:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   986 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  773 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  775 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  112 |     Iter const & operator = (Iter const & other_)
      |                  ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18:   required from ‘bool loadGenomes(TGenomeSet&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<seqan::String<char, seqan::Alloc<> >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:    77 |         if (!open(seqFileIn, toCString(fileNameList[filecount])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:   670 |     if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18:   required from ‘bool loadGenomes(TGenomeSet&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<seqan::String<char, seqan::Alloc<> >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    77 |         if (!open(seqFileIn, toCString(fileNameList[filecount])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   670 |     if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18:   required from ‘bool loadGenomes(TGenomeSet&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<seqan::String<char, seqan::Alloc<> >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    77 |         if (!open(seqFileIn, toCString(fileNameList[filecount])))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   670 |     if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1412 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void [clone .isra.0]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 92%] Linking CXX executable ../../bin/snp_store
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store  -lrt -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 92%] Built target snp_store
make  -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 92%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:28,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:29:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:676:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  676 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:704:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  704 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:730:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  730 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:748:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:770:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:51:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:513:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  513 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   340 |     return TRevComp(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1591 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   281 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  140 |             _host(std::forward<THost_>(host)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:210:11:   required from ‘bool seqan::loadReadsSam(TReadSet&, TNameSet&, TReadRegions&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TNameSet = StringSet<String<char, Alloc<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   210 |         if (!open(file, fileName)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:190:21:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   190 |                         if (!loadReadsSam(readSet, readNames, readRegions, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:666:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  666 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  674 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2591:20:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2591 |                                 if (matchVerify( (*it).i2,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                     ~~~~~~~~~~~^~~~~~~~~~~
    2592 |                                                 infix(genome, (*it).i2.gBegin, maxEndPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2593 |                                                 rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~
    2594 |                                                 readSet, //readSetL
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~
    2595 |                                                 forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~~~~~~~~~~
    2596 |                                                 options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~
    2597 |                                                 TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~~~~~~
    2598 |                                                 LongestPrefix()) &&
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                 ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:666:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  666 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  674 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1430 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1658:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1658 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1979:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1979 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2125:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2125 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1430 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   140 |             _host(std::forward<THost_>(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   340 |     return TRevComp(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1591 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   281 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10:   required from ‘TStream& seqan::operator<<(TStream&, const Segment<THost, TSpec>&) [with TStream = VirtualStream<char, Tag<Output_> >; THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   789 |     write(it, source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:900:12:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   900 |                                                 file << reads[(*it).rseqNo];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                 ~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   281 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Rooted_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    98 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; typename Iterator<TObject, const Tag<Rooted_> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TContainer = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:801:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = VirtualStream<char, Tag<Output_> >; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   801 |     write(it, source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1591 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   281 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |         if (!open(seqFile, fname) || atEnd(seqFile))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   395 |             data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2419:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2419 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3041:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3041 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3043:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3043 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   674 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3074:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3074 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3076:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  3076 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   395 |             data_iterator(begin(haystack, Rooted())), haystackEnd(), _needReinit(true), curHit(), endHit(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:671:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   671 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2187:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2187 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2190:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2190 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1928 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1430 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2198:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2198 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1929 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2201:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:  2201 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  752 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1876 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:910:21:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   910 |     return container(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1682:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1682 |     int64_t textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1693:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1693 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2489:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2489 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:606:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  606 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:910:21:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   910 |     return container(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1682:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1682 |     int64_t textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1693:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1693 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2489:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2489 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:606:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  606 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:675:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   675 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1876 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1845 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1965 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1866 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1934 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  585 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1432:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1432 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   663 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Rooted_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; typename Iterator<TObject, const Tag<Rooted_> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_> >, StreamIterator<Tag<Output_> > >; TContainer = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:801:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = VirtualStream<char, Tag<Output_> >; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   801 |     write(it, source);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1591 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   281 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2383:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2383 |         TReadSetL &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2384:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2384 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3041:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  3041 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2384:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2384 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3043:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3043 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:652:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   652 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:675:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   675 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:1717:14:   required from ‘bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions<TSpec>&, char, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TRead = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1717 |                 appendValue(strL,genomeInfL);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2701 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   652 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   652 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2187:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:  2187 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘constexpr seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  107 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   652 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2190:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2190 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  278 |     Index(Index const &other):
      |     ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  229 | class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  281 |         Shape(Shape const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1414:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1414 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1432:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1432 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   369 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1845 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1965 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2454 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3039 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   599 |     return container(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:688:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   688 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2543 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                      ~~~~~~~~~~~^~~~
    2544 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2545 |                                         rseqNo,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~  
    2546 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2547 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~~~~~
    2548 |                                         options,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~ 
    2549 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~
    2550 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   369 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1845 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1965 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1913 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   705 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   599 |     return container(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1603 |     TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1636 |     return find(finder, pattern, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1654 |     return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1437:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TSpec>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1437 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   763 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~^
     764 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     765 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     766 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  2195 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2701 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2701 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2237 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  3072 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2169 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:259:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:671:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   671 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1028 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2122 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  2184 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   250 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   717 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, char*>(char* const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, char*>(int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, char*>(char* const&)unsigned int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned int>(unsigned int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, char*>(unsigned int const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, char*>(char* const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, char*>(short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, char*>(char* const&)unsigned short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned short>(unsigned short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, char*>(unsigned short const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, char*>(char* const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, char*>(char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, char*>(char* const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, char*>(unsigned char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, char*>(char* const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, char*>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, char*>(signed char const&, char* const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<int>(int)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)short’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<short>(short)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<short, seqan::String<char, seqan::Alloc<void> > >(short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<char>(char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<char, seqan::String<char, seqan::Alloc<void> > >(char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<unsigned char>(unsigned char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned char, seqan::String<char, seqan::Alloc<void> > >(unsigned char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)signed char’,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47,
    inlined from ‘seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>::operator()<signed char>(signed char)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<signed char, void>)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned char, seqan::TagList<signed char, void> >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::tagApply<seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >&>&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20,
    inlined from ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::_appendTagsSamToBamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&, seqan::String<char, seqan::Alloc<void> >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const signed char &’ to ‘seqan::BadLexicalCast::BadLexicalCast<signed char, seqan::String<char, seqan::Alloc<void> > >(signed char const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned short’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const short unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned short, seqan::String<char, seqan::Alloc<void> > >(unsigned short const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned int, seqan::String<char, seqan::Alloc<void> > >(unsigned int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
In function ‘seqan::lexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)int’,
    inlined from ‘seqan::readRecord<seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<char, seqan::Alloc<void> > >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&, seqan::Tag<seqan::Sam_> const&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43,
    inlined from ‘seqan::readRecord<void>(seqan::BamAlignmentRecord&, seqan::FormattedFile<seqan::Tag<seqan::Bam_>, seqan::Tag<seqan::Input_>, void>&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15,
    inlined from ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘seqan::loadReadsSam<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> > >(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long, seqan::BitPacked<2u, 64u> >, void>, seqan::Alloc<void> >&, char const*, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)bool’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<int, seqan::String<char, seqan::Alloc<void> > >(int const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 93%] Linking CXX executable ../../bin/splazers
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 93%] Built target splazers
make  -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 93%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:24:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:25:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:30,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:28:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_types.h:155:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  155 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_types.h:207:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  207 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:127:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |     public::std::unary_function<AminoAcid, AminoAcid>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   685 |         mainWithOptions(options, String<Dna>());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    60 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      61 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      62 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:    68 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      69 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      70 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  690 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  102 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   103 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   677 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  194 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   202 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   577 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<seqan::Segment<THost_, seqan::InfixSegment>, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   773 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   467 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:190:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of ‘void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37:   required from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int; BandedWatermanEggert = Tag<BandedWatermanEggert_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   570 |     _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35:   required from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   109 |         return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     110 |                                    enumerator._cutoff, enumerator._lowerDiag, enumerator._upperDiag,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     111 |                                    BandedWatermanEggert());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30:   required from ‘bool seqan::nextLocalAlignment(Align<TSequence, TAlignSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   121 |     return nextLocalAlignment(row(align, 0), row(align, 1), enumerator);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   607 |     while (nextLocalAlignment(localAlign, enumerator)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >& seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::operator=(const seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&)’ is deprecated [-Wdeprecated-copy]
  287 |             matIt2 = matIt - diagonalWidth;
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because ‘seqan::Iter<seqan::Matrix<int>, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >’ has user-provided ‘seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >::Iter(const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >&) [with TContainer = seqan::Matrix<int>]’
  105 |     Iter(Iter const & other_) :
      |     ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<TTarget> > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename DisableIf<Is<StlContainerConcept<TTarget> > >::Type = void]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   645 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   863 |         create(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   339 |     return value(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   395 |     return host(obj);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   687 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  110 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  143 |         Index(Index const &other):
      |         ^~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   241 |     if (!open(inSeqs, (toCString(fileName))))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   618 |     if (!_importSequences(options.queryFile, "query", queries, queryIDs))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >&; TSource = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   217 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   614 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  104 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TContext>::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   594 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   604 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<char, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<char, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TValue>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   396 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1342 |             TTargetValue temp_copy(std::forward<TValue>(_value)); //temp copy because resize could invalidate _value
      |                          ^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   744 |     TConstSeqHIterator seqHIter = seqHIterBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<LinearGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   685 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   687 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   689 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   691 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>*; TParam = const Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   693 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<char, Alloc<> >, InfixSegment>*; TParam = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1348 |                 valueConstruct(begin(me, Standard()) + me_length, std::forward<TTargetValue>(temp_copy)); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<char, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<char, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<String<char, Alloc<> >, InfixSegment>*; TParam = const Segment<String<char, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1354 |             valueConstruct(begin(me, Standard()) + me_length, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, TValue&&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment<String<char, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1366 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, std::forward<TValue>(_value));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16:   required from ‘void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment<String<char, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   937 |     appendValue(std::forward<T>(me), std::forward<TValue>(_value), typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   633 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    56 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      57 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      58 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<> >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<LinearGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<LinearGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<LinearGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   458 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   705 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     706 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     707 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    64 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      65 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      66 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString2, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   174 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TValue>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   655 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   695 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
[ 95%] Linking CXX executable ../../bin/stellar
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_goUp’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_goUp’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 95%] Built target stellar
make  -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 95%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:19:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  304 |     public std::binary_function<TVertexDescriptor, TCargo, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119:
In function ‘seqan::lexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&)unsigned long’,
    inlined from ‘readPhylipMatrix<seqan::String<double, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::String<double, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:54:40:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized]
  255 |         throw BadLexicalCast(target, source);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function ‘readPhylipMatrix<seqan::String<double, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > > >(seqan::String<double, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::Iter<seqan::VirtualStream<char, seqan::Tag<seqan::Input_>, std::char_traits<char> >, seqan::StreamIterator<seqan::Tag<seqan::Input_> > >&)void’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const long unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast<unsigned long, seqan::String<char, seqan::Alloc<void> > >(unsigned long const&, seqan::String<char, seqan::Alloc<void> > const&)’ declared here
   72 |     BadLexicalCast(TTarget const & target, TSource const & source) :
      |     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here
  253 |     TTarget target;
      |             ^~~~~~
[ 96%] Linking CXX executable ../../bin/tree_recon
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 96%] Built target tree_recon
make  -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 96%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:50:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:49:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:209:34:   required from ‘void trimSeqNames(SeqStore<TSpec, TConfig>&) [with TSpec = void; TConfig = YaraContigsConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   209 |         TSeqNameIt nameIt = begin(me.names[nameId], Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:201:21:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   201 |         trimSeqNames(me.contigs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     if (!open(me.contigsFile, toCString(me.options.contigsFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   195 |     if (!open(me.contigsFile, toCString(me.options.contigsFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:209:34:   required from ‘void trimSeqNames(SeqStore<TSpec, TConfig>&) [with TSpec = void; TConfig = YaraContigsConfig<>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   209 |         TSeqNameIt nameIt = begin(me.names[nameId], Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:201:21:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   201 |         trimSeqNames(me.contigs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   195 |     if (!open(me.contigsFile, toCString(me.options.contigsFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     if (!open(me.contigsFile, toCString(me.options.contigsFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   recursively required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14:   required from ‘void loadContigs(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   195 |     if (!open(me.contigsFile, toCString(me.options.contigsFile)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   357 |     loadContigs(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned char, unsigned int, Tag<Pack_> >, External<ExternalConfigLarge<> > >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, Alloc<> > > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:186:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String<Pair<unsigned char, unsigned int, Tag<Pack_> >, External<ExternalConfigLarge<> > >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, Alloc<> > > > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   186 |         _createSuffixArrayPipelining(sa, s, alg);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<short unsigned int, unsigned int, Tag<Pack_> >, External<ExternalConfigLarge<> > >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, Alloc<> > > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:186:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String<Pair<short unsigned int, unsigned int, Tag<Pack_> >, External<ExternalConfigLarge<> > >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, Alloc<> > > > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   186 |         _createSuffixArrayPipelining(sa, s, alg);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   414 |                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   415 |                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   432 |                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   443 |                 push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   294 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   416 |                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                     textIn, limits,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~
     352 |                     names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                     sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   633 |             else            handler2->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   904 |                 writer->end();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   786 |             endWrite();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   312 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  534 |                         *cb->cur = pool.undefinedValue;
      |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   218 |             process(_textIn);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  762 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned char, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned char, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<short unsigned int, unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   447 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<short unsigned int, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   337 |         saveIndex<uint16_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<short unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   622 |             if (handler1)    handler1->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                              ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  311 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   623 |             else            handler2->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                             ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   881 |             writer->push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:  1167 |         me.push(Val_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  517 |             *cb.cur = item;
      |             ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   302 |                     ++in.in5;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   332 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   556 |             else            return handler2->next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                    ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   744 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   870 |             reader->pop();
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > > >, seqan::FMIndex<void, YaraFMConfig<unsigned char, unsigned int, unsigned int, seqan::Alloc<> > > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   211 |             _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   267 |         typename Iterator<TIndex, TopDown<> >::Type it(index);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |                                                     ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   303 |         saveIndex<TContigsSize, TContigsLen, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   316 |         saveIndex<TContigsSize, uint32_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27:   required from ‘void saveIndex(YaraIndexer<TSpec, TConfig>&) [with TSpec = void; TConfig = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   333 |         saveIndex<uint8_t>(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:   360 |     saveIndex(indexer);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note:       |     ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  202 |                     *refNext = *I;
      |                     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  203 |                     *I = *refPrev;
      |                     ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  243 |                     *cur = *refPrev;
      |                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
   82 |     inline Triple(Triple const &_p)
      |            ^~~~~~
[ 98%] Linking CXX executable ../../bin/yara_indexer
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer  -lrt -lz -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign.constprop.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1366:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 98%] Built target yara_indexer
make  -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make  -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 98%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:59:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   79 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/random:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  113 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  147 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  219 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  228 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  237 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  246 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  255 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  264 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  276 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  287 | struct FunctorComplement<Iupac> : public std::unary_function<Iupac,Iupac>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  393 | struct PosLess_ : public std::binary_function<TPos, TPos, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1338 |         struct testIODone : public std::unary_function<TPageFrame&,bool>
      |                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public std::unary_function<TValue, TResult>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  351 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  457 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public std::binary_function < PageBucket<TValue>,
      |                                              ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |         public std::binary_function <
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  206 |         struct insertBucket : public std::unary_function<TPageBucket,void>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  321 |         struct insertBucket : public std::unary_function<TPageBucket, void> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  325 |     public std::unary_function<Pair<TKey, TValue>, bool>
      |                 ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 | struct LessPairI1_ : public std::unary_function<Pair<TWeight, TPair>, bool>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |     struct SetLess_ : public std::binary_function<TElement, TElement, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  340 |     struct FibreLess: public std::binary_function<FibreRecord, unsigned, bool>
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  646 |     struct FunctorGlobalize : public std::unary_function<InType,Result>
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  660 |     struct FunctorGlobalize<InType, Nothing, Result> : public std::unary_function<InType,InType>
      |                                                                    ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  666 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  714 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  782 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  851 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  885 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  933 | public std::binary_function < TSAValue, TSAValue, bool >
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1814 | struct _qgramComp : public std::binary_function<InType,InType,Result> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1833 | public std::binary_function<
      |             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |         public std::binary_function < TSAValue, TSAValue, bool >
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public std::binary_function < SkewDCStream<TValue>,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |     struct _mapInverse : public std::unary_function<InType,Result> {
      |                                      ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |     struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                           ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |     struct _filterGlobalizer : public std::unary_function<InType,Result> {
      |                                            ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  556 |         public std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  120 |     struct RepeatLess_ : public std::binary_function<TPos, TPos, bool>
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:69:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  221 | struct QualityExtractor : public std::unary_function<TValue, char>
      |                                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  224 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  234 |     public std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  352 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  362 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  372 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  382 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  392 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  402 |     public std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2155 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:91:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In function ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&)’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_function.h:1435:
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/usr/include/c++/14/backward/binders.h:172:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/usr/include/c++/14/backward/binders.h:172:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/usr/include/c++/14/backward/binders.h:172:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/usr/include/c++/14/backward/binders.h:172:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/usr/include/c++/14/backward/binders.h:172:5: note:   739 |     return _open(file, fileName, openMode, False());
/usr/include/c++/14/backward/binders.h:172:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   699 |     if (!open(bamFile, bamFilename))
/usr/include/c++/14/backward/binders.h:172:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Sam_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Sam_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const char*, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Bam_]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   159 |     TLowcase lowcaseFileName(fileName);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Bam_>, TagList<Tag<Sam_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<Bam_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   699 |     if (!open(bamFile, bamFilename))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1326 |     rankMatches(me, readSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<SingleEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1326 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1267 |     rankMatches(me, readSeqs);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   425 |         configureMapper(options, Serial());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<unsigned int>; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  946 |         removeIf(libraryLengths, std::bind2nd(std::greater<unsigned>(), 6.0 * libraryMedian), typename TTraits::TThreading());
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<float>; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  958 |         transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus<float>(), libraryMean), typename TTraits::TThreading());
      |                                                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1328 |         verifyMatches(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1405 |         mapReads(me);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:  1432 |     runMapper(mapper);
/usr/include/c++/14/backward/binders.h:172:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/usr/include/c++/14/backward/binders.h:172:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/usr/include/c++/14/backward/binders.h:172:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/usr/include/c++/14/backward/binders.h:172:5: note:   422 |         configureMapper(options, Parallel());
/usr/include/c++/14/backward/binders.h:172:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:97:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:140:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; All = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1269 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Serial_>, seqan::Tag<PairedEnd_>, seqan::Tag<All_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1405 |         mapReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Serial_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   425 |         configureMapper(options, Serial());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   initializing argument 2 of ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
  294 | inline void setHost(StringSet<THost, Segment<TSpec> > & me, typename Parameter_<THost>::Type host)
      |                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:57:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<long unsigned int, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<long unsigned int, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:205:36:   required from ‘typename seqan::Parameter_<TPositions>::Type seqan::cargo(const ModifiedString<THost, ModPos<TPositions> >&) [with THost = String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >; TPositions = Segment<String<long unsigned int, Alloc<> >, InfixSegment>; typename Parameter_<TPositions>::Type = Segment<String<long unsigned int, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   205 |     return _toParameter<TPositions>(me._cargo);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:309:23:   required from ‘bool seqan::empty(const ModifiedString<THost, ModPos<TPositions> >&) [with THost = String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >; TPositions = Segment<String<long unsigned int, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   309 |     return empty(cargo(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                  ~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:858:18:   required from ‘void rankMatches(Mapper<TSpec, TConfig>&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   858 |         if (empty(matches)) return TMatchesSize(0);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |             ~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1326 |     rankMatches(me, readSeqs);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  365 |     return _object;
      |            ^~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<long unsigned int, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30:   required from ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   296 |     me.data_host = _toPointer(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                    ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30:   required from ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   296 |     me.data_host = _toPointer(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                    ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30:   required from ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   296 |     me.data_host = _toPointer(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                    ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30:   required from ‘void seqan::setHost(StringSet<THost, Segment<TSpec> >&, typename Parameter_<TContainer>::Type) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<TContainer>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   296 |     me.data_host = _toPointer(host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                    ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1109 |     setHost(me.matesSetByCoord, me.matesByCoord);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   required from ‘void mapReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1237 |     _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFastq_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13:   required from ‘bool seqan::open(PrefetchedFile<TFile, TRecords, Tag<Parallel_> >&, const char*) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Input_> >; TRecords = SeqStore<void, SeqConfig<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   151 |     if (open(me.file, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:408:14:   required from ‘void _openReadsImpl(Mapper<TSpec, TConfig>&, SingleEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; SingleEnd = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   408 |     if (!open(me.readsFile, toCString(me.options.readsFile.i1)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:402:19:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TIterator = Iter<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, CountingIteratorImpl_<Tag<Nothing_> > >; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:37:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TFunctor = ReadsClassifier<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<Strata_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   244 |        TIter it = begin(c, iterTag) + splitter[i];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12:   required from ‘void _classifyReadsImpl(ReadsClassifier<TSpec, TConfig>&, Strata) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |     iterate(pairs, me, Rooted(), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27:   required from ‘ReadsClassifier<TSpec, TConfig>::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String<Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >, seqan::Alloc<> >; TSeeds = seqan::StringSet<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Segment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    76 |         _classifyReadsImpl(*this, typename TConfig::TStrategy()); //, typename TConfig::TAnchoring());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17:   required from ‘void classifyReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   656 |     TClassifier classifier(me.ctx, me.hits[0], me.seeds[0], me.options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1288:18:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:  1288 |     classifyReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>::Segment(const seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>; TIterator = seqan::Iter<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(StringSet<THost, Segment<TSpec> >&) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   279 |     return _toParameter<THost>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17:   required from ‘void seqan::bucket(StringSet<THost, Segment<TSpec> >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter<Match<Limits<unsigned char, unsigned int, unsigned int> >, const Tag<ReadId_> >; TMaxKey = long unsigned int; TThreading = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   182 |     forEach(host(me), TCounter(stringSetLimits(me), nextKey), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1110 |     bucket(me.matesSetByCoord, Getter<TMatch, ReadId>(), getReadsCount(me.reads.seqs), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(StringSet<THost, Segment<TSpec> >&) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   279 |     return _toParameter<THost>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17:   required from ‘void seqan::bucket(StringSet<THost, Segment<TSpec> >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter<Match<Limits<unsigned char, unsigned int, long unsigned int> >, const Tag<ReadId_> >; TMaxKey = long unsigned int; TThreading = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   182 |     forEach(host(me), TCounter(stringSetLimits(me), nextKey), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |             ~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1110 |     bucket(me.matesSetByCoord, Getter<TMatch, ReadId>(), getReadsCount(me.reads.seqs), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<unsigned char, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(StringSet<THost, Segment<TSpec> >&) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   279 |     return _toParameter<THost>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17:   required from ‘void seqan::bucket(StringSet<THost, Segment<TSpec> >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter<Match<Limits<short unsigned int, unsigned int, unsigned int> >, const Tag<ReadId_> >; TMaxKey = long unsigned int; TThreading = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   182 |     forEach(host(me), TCounter(stringSetLimits(me), nextKey), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |             ~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1110 |     bucket(me.matesSetByCoord, Getter<TMatch, ReadId>(), getReadsCount(me.reads.seqs), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(StringSet<THost, Segment<TSpec> >&) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; typename Parameter_<T>::Type = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   279 |     return _toParameter<THost>(me.data_host);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17:   required from ‘void seqan::bucket(StringSet<THost, Segment<TSpec> >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TSpec = Segment<String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, const Tag<ReadId_> >; TMaxKey = long unsigned int; TThreading = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   182 |     forEach(host(me), TCounter(stringSetLimits(me), nextKey), tag);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |             ~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11:   required from ‘void _verifyMatchesImpl(Mapper<TSpec, TConfig>&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1110 |     bucket(me.matesSetByCoord, Getter<TMatch, ReadId>(), getReadsCount(me.reads.seqs), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23:   required from ‘void verifyMatches(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1081 |     _verifyMatchesImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22:   required from ‘void _mapReadsImpl(Mapper<TSpec, TConfig>&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:  1328 |         verifyMatches(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   351 |         spawnMapper<TContigsSize, TContigsLen, uint64_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   381 |         configureMapper<uint16_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>&)’ is deprecated [-Wdeprecated-copy]
  358 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because ‘seqan::Segment<seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >, seqan::SuffixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::SuffixSegment>& seqan::Segment<THost_, seqan::SuffixSegment>::operator=(const seqan::Segment<THost_, seqan::SuffixSegment>&) [with THost_ = seqan::String<Match<Limits<short unsigned int, unsigned int, long unsigned int> >, seqan::Alloc<> >]’
  129 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = TagFasta_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13:   required from ‘bool seqan::open(PrefetchedFile<TFile, TRecords, Tag<Parallel_> >&, const char*) [with TFile = FormattedFile<Tag<TagFastq_>, Tag<Input_> >; TRecords = SeqStore<void, SeqConfig<void> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   151 |     if (open(me.file, fileName))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:408:14:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>, AdaptorIterator<Iter<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, CountingIteratorImpl_<Tag<Nothing_> > >, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>, AdaptorIterator<Iter<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, CountingIteratorImpl_<Tag<Nothing_> > >, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>, AdaptorIterator<Iter<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, CountingIteratorImpl_<Tag<Nothing_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:24:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TFunctor = ReadsClassifier<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<Strata_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   244 |        TIter it = begin(c, iterTag) + splitter[i];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12:   required from ‘void _classifyReadsImpl(ReadsClassifier<TSpec, TConfig>&, Strata) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |     iterate(pairs, me, Rooted(), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27:   required from ‘ReadsClassifier<TSpec, TConfig>::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String<Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >, seqan::Alloc<> >; TSeeds = seqan::StringSet<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Segment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    76 |         _classifyReadsImpl(*this, typename TConfig::TStrategy()); //, typename TConfig::TAnchoring());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17:   required from ‘void classifyReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   656 |     TClassifier classifier(me.ctx, me.hits[0], me.seeds[0], me.options);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                 ^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1288:18:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>::Segment(const seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>; TIterator = seqan::Iter<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/write_sam.h:114:14:   required from ‘void seqan::write(TTarget&, const BamHeader&, const BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, const Sam&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TNameStore = StringSet<String<char, Alloc<> >, Owner<ConcatDirect<Limits<unsigned int> > > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> >, Owner<ConcatDirect<Limits<unsigned int> > > >, String<char, Alloc<> > >; TStorageSpec = Dependent<Tag<TagInsist_> >; BamHeader = String<BamHeaderRecord>; Sam = Tag<Sam_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         write(target, contigNames(context)[i]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:293:14:   required from ‘void seqan::write(TTarget&, const BamHeader&, BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>&, const TagSelector<TTagList>&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TNameStore = StringSet<String<char, Alloc<> >, Owner<ConcatDirect<Limits<unsigned int> > > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> >, Owner<ConcatDirect<Limits<unsigned int> > > >, String<char, Alloc<> > >; TStorageSpec = Dependent<Tag<TagInsist_> >; TTagList = TagList<Tag<Sam_> >; BamHeader = String<BamHeaderRecord>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   293 |         write(target, header, context, TFormat());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:295:14:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Embl_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   required from ‘bool seqan::open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   739 |     return _open(file, fileName, openMode, False());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >; TSpec = PrefixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>; TIterator = seqan::Iter<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TIterator = Iter<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, CountingIteratorImpl_<Tag<Nothing_> > >; TSpec = Tag<Default_>; TIntegral = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:37:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = Segment<const StringSet<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, Owner<ConcatDirect<> > >, PrefixSegment>; TFunctor = ReadsClassifier<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<Strata_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   244 |        TIter it = begin(c, iterTag) + splitter[i];
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12:   required from ‘void _classifyReadsImpl(ReadsClassifier<TSpec, TConfig>&, Strata) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   114 |     iterate(pairs, me, Rooted(), typename TConfig::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27:   required from ‘ReadsClassifier<TSpec, TConfig>::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String<Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >, seqan::Alloc<> >; TSeeds = seqan::StringSet<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::Segment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:    76 |         _classifyReadsImpl(*this, typename TConfig::TStrategy()); //, typename TConfig::TAnchoring());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>::Segment(const seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<> > >]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<long unsigned int, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<long unsigned int, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:216:27:   required from ‘void seqan::setCargo(ModifiedString<THost, ModPos<TPositions> >&, typename Parameter_<TPositions>::Type) [with THost = String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >; TPositions = Segment<String<long unsigned int, Alloc<> >, InfixSegment>; typename Parameter_<TPositions>::Type = Segment<String<long unsigned int, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   216 |     me._cargo = _toPointer(_cargo);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                 ~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:357:13:   required from ‘typename seqan::Infix<seqan::ModifiedString<THost, seqan::ModPos<TPositions> > >::Type seqan::infix(ModifiedString<THost, ModPos<TPositions> >&, TPosBegin, TPosEnd) [with THost = String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >; TPositions = String<long unsigned int, Alloc<> >; TPosBegin = long unsigned int; TPosEnd = long unsigned int; typename Infix<ModifiedString<THost, ModPos<TPositions> > >::Type = ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<Segment<String<long unsigned int, Alloc<> >, InfixSegment> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   357 |     setCargo(other, infix(cargo(me), pos_begin, pos_end));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:649:17:   required from ‘typename seqan::Infix<T>::Type seqan::infixWithLength(T&&, TPosBegin, TSize) [with T = ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >; TPosBegin = long unsigned int; TSize = long unsigned int; typename Infix<T>::Type = ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<Segment<String<long unsigned int, Alloc<> >, InfixSegment> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   649 |     return infix(t, pos_begin, pos_begin + length);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:489:27:   required from ‘typename seqan::InfixOnValue<const THost>::Type seqan::value(const StringSet<THost, Segment<TSpec> >&, TPos) [with THost = ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >; TSpec = ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >; TPos = long unsigned int; typename InfixOnValue<const THost>::Type = const ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<Segment<String<long unsigned int, Alloc<> >, InfixSegment> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   489 |     return infixWithLength(host(me), me.positions[pos], me.limits[pos + 1] - me.limits[pos]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:215:17:   required from ‘typename seqan::Reference<const seqan::Iter<TContainer, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > > >::Type seqan::value(const Iter<TContainer, CountingIteratorImpl_<Tag<Nothing_> > >&) [with TContainer = const StringSet<ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >, Segment<ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >, InfixSegment> >; typename Reference<const Iter<TContainer, CountingIteratorImpl_<Tag<Nothing_> > > >::Type = const ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<Segment<String<long unsigned int, Alloc<> >, InfixSegment> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   215 |     return value(container(me), position(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:885:53:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<long unsigned int, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<long unsigned int, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = GenBank_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   required from ‘bool seqan::_open(FormattedFile<TFileFormat, TDirection, TSpec>&, const char*, int, TThrowExceptions) [with TFileFormat = Tag<TagFastq_>; TDirection = Tag<Input_>; TSpec = void; TThrowExceptions = False]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   722 |         if (!guessFormatFromFilename(basename, file.format))    // read/write from/to a file (with extension)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1397:14:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1397 |     openReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:90:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h: In instantiation of ‘void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:455:12:   required from ‘void _fillReadSeqQual(MatchesWriter<TSpec, Traits>&, TReadSeqId) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   455 |     setQual(me.record, me.reads.seqs[readSeqId]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:305:21:   required from ‘void _writeMappedRead(MatchesWriter<TSpec, Traits>&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match<Limits<unsigned char, unsigned int, unsigned int> >; SingleEnd = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     _fillReadSeqQual(me, getReadSeqId(primary, me.reads.seqs));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:236:25:   required from ‘void _writeMatchesImpl(MatchesWriter<TSpec, Traits>&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter<const seqan::ModifiedString<seqan::ModifiedString<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   236 |         _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:102:26:   required from ‘void MatchesWriter<TSpec, Traits>::operator()(const TIterator&) [with TIterator = seqan::Iter<const seqan::ModifiedString<seqan::ModifiedString<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >; TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   102 |         _writeMatchesImpl(*this, it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = const ModifiedString<ModifiedString<String<Match<Limits<unsigned char, unsigned int, unsigned int> >, Alloc<> >, ModPos<String<long unsigned int, Alloc<> > > >, ModPos<String<long unsigned int, Alloc<> > > >; TFunctor = MatchesWriter<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<Strata_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |             f(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:96:16:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:164:16: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  164 |     TQualities qual(string);
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:81:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h: In instantiation of ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         if (!_extendLeft(extender, haystackLeft, needleLeft, matchBegin, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   required from ‘void HitsExtender<TSpec, Traits>::operator()(const THitsIterator&) [with THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   112 |         _extendHitImpl(*this, hitsIt, typename Traits::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = const String<Hit<long unsigned int, Tag<HammingDistance_> >, Alloc<> >; TFunctor = HitsExtender<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<All_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   248 |             f(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |             ~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:134:12:   required from ‘void _extendHitsImpl(HitsExtender<TSpec, Traits>&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   134 |     iterate(me.hits, me, Standard(), typename Traits::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:106:24:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:220:25: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  220 |         TNeedleInfixRev needleInfixRev(needleInfix);
      |                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:221:27: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  221 |         THaystackInfixRev haystackInfixRev(haystackInfix);
      |                           ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:241:21: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  241 |     TNeedleInfixRev needleInfixRev(needleInfix);
      |                     ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:242:23: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  242 |     THaystackInfixRev haystackInfixRev(haystackInfix);
      |                       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h: In instantiation of ‘bool _extendRight(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   429 |         if (!_extendRight(extender, haystackRight, needleRight, matchEnd, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   required from ‘void HitsExtender<TSpec, Traits>::operator()(const THitsIterator&) [with THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   112 |         _extendHitImpl(*this, hitsIt, typename Traits::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14:   required from ‘void seqan::iterate(TContainer&, TFunctor, const Tag<TExpand>&, Parallel) [with TContainer = const String<Hit<long unsigned int, Tag<HammingDistance_> >, Alloc<> >; TFunctor = HitsExtender<void, MapperTraits<void, ReadMapperConfig<Tag<Parallel_>, Tag<SingleEnd_>, Tag<All_>, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag<Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   248 |             f(it);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |             ~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:134:12:   required from ‘void _extendHitsImpl(HitsExtender<TSpec, Traits>&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   134 |     iterate(me.hits, me, Standard(), typename Traits::TThreading());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:106:24:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:311:20: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  311 |     THaystackInfix haystackPrefix(haystackInfix);
      |                    ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:312:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  312 |     TNeedleInfix needlePrefix(needleInfix);
      |                  ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   117 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   351 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StreamConcept<TStream> >, typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment<const String<char, Alloc<> >, InfixSegment>; TDirection = Tag<Input_>; typename DisableIf<Is<StreamConcept<TStream> >, typename Iterator<TObject, const Tag<Rooted_> >::Type>::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<char, Alloc<> >, InfixSegment>, AdaptorIterator<const char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   515 |     return begin(cont, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87:   required from ‘typename seqan::EnableIf<seqan::And<seqan::Not<seqan::IsContiguous<TContainer> >, seqan::And<seqan::Is<seqan::ContainerConcept<TContainer> >, seqan::Not<seqan::Is<seqan::ContainerConcept<typename seqan::Value<TIterator2>::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter<VirtualStream<char, Tag<Output_>, std::char_traits<char> >, StreamIterator<Tag<Output_> > >; TContainer = Segment<const String<char, Alloc<> >, InfixSegment>; typename EnableIf<And<Not<IsContiguous<TContainer> >, And<Is<ContainerConcept<TContainer> >, Not<Is<ContainerConcept<typename Value<TIterator2>::Type> > > > >, void>::Type = void; typename Value<TIterator2>::Type = char]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1085 |     typename DirectionIterator<TContainer const, Input>::Type iter = directionIterator(cont, Input());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/write_sam.h:114:14:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<char, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of ‘bool seqan::guessFormatFromFilename(const TFilename&, Tag<TagSpec>) [with TFilename = Segment<const char*, PrefixSegment>; TFormat_ = Raw_]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   114 |         if (guessFormatFromFilename(fname, TFormat()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35:   required from ‘bool seqan::guessFormatFromFilename(const TFilename&, TagSelector<TSubList>&) [with TFilename = Segment<const char*, PrefixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<Embl_>, TagList<Tag<GenBank_>, TagList<Tag<Raw_>, TagList<Tag<Sam_>, TagList<Tag<Bam_> > > > > > > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   120 |     return guessFormatFromFilename(fname, static_cast<typename TagSelector<TTagList>::Base &>(format));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:402:19:   required from ‘void openReads(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |     _openReadsImpl(me, typename TConfig::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1397:14:   required from ‘void runMapper(Mapper<TSpec, TConfig>&) [with TSpec = void; TConfig = ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1397 |     openReads(me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14:   required from ‘void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1432 |     runMapper(mapper);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared ‘constexpr seqan::Segment<const char*, seqan::PrefixSegment>::Segment(const seqan::Segment<const char*, seqan::PrefixSegment>&)’ is deprecated [-Wdeprecated-copy]
  159 |     TLowcase lowcaseFileName(fileName);
      |              ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because ‘seqan::Segment<const char*, seqan::PrefixSegment>’ has user-provided ‘seqan::Segment<THost, seqan::PrefixSegment>& seqan::Segment<THost, seqan::PrefixSegment>::operator=(const seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]’
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, const char>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const char*, seqan::PrefixSegment>]’
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   151 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:164:16:   required from ‘void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   164 |     TQualities qual(string);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:455:12:   required from ‘void _fillReadSeqQual(MatchesWriter<TSpec, Traits>&, TReadSeqId) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   455 |     setQual(me.record, me.reads.seqs[readSeqId]);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:305:21:   required from ‘void _writeMappedRead(MatchesWriter<TSpec, Traits>&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match<Limits<unsigned char, unsigned int, unsigned int> >; SingleEnd = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   305 |     _fillReadSeqQual(me, getReadSeqId(primary, me.reads.seqs));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:236:25:   required from ‘void _writeMatchesImpl(MatchesWriter<TSpec, Traits>&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter<const seqan::ModifiedString<seqan::ModifiedString<seqan::String<Match<Limits<unsigned char, unsigned int, unsigned int> >, seqan::Alloc<> >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::ModPos<seqan::String<long unsigned int, seqan::Alloc<> > > >, seqan::CountingIteratorImpl_<seqan::Tag<seqan::Nothing_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   236 |         _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:102:26:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:220:25:   required from ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   220 |         TNeedleInfixRev needleInfixRev(needleInfix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         if (!_extendLeft(extender, haystackLeft, needleLeft, matchBegin, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   required from ‘void HitsExtender<TSpec, Traits>::operator()(const THitsIterator&) [with THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   112 |         _extendHitImpl(*this, hitsIt, typename Traits::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   118 |         _host(_toPointer(host)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:221:27:   required from ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   221 |         THaystackInfixRev haystackInfixRev(haystackInfix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         if (!_extendLeft(extender, haystackLeft, needleLeft, matchBegin, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   required from ‘void HitsExtender<TSpec, Traits>::operator()(const THitsIterator&) [with THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   112 |         _extendHitImpl(*this, hitsIt, typename Traits::TStrategy());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  443 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:243:17:   required from ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   243 |     TFinderLeft finder(haystackInfixRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         if (!_extendLeft(extender, haystackLeft, needleLeft, matchBegin, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:317:18:   required from ‘bool _extendRight(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   317 |     TFinderRight finder(haystackPrefix);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   429 |         if (!_extendRight(extender, haystackRight, needleRight, matchEnd, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   required from ‘void _extendHitImpl(HitsExtender<TSpec, Traits>&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit<long unsigned int, seqan::Tag<seqan::HammingDistance_> >*; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   216 |         extend(me.extender,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~~
     217 |                readSeq,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~
     218 |                contigBegin, contigEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~
     219 |                getValueI1(readPos), getValueI2(readPos),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     220 |                hitErrors, maxErrors,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~
     221 |                me);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   469 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   301 |         : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:243:17:   required from ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   243 |     TFinderLeft finder(haystackInfixRev);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                 ^~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   required from ‘void extend(Extender<THaystack, TNeedle, TDistance, TSpec>&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>; TSpec = void; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<SingleEnd_>, seqan::Tag<All_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         if (!_extendLeft(extender, haystackLeft, needleLeft, matchBegin, needleErrors, maxErrors)) return;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82,
                 from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>*; TParam = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>*; TParam = const Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Value<TContext>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TValue2 = const Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; THostValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28:   required from ‘void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>*; TParam = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   305 |     TConstructor::construct(it, std::forward<TParam>(param_));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19:   required from ‘typename seqan::Value<TContext>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Value<TContext>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   548 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   650 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSource = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   887 |         create(me, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   135 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  254 |         new( (void*) & value(it) ) TNonConstValue(std::forward<TParam>(param_));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TIterator = Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TIterator = Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   634 |     TConstSeqHIterator seqHIterEndColumnTop = begin(seqH, Rooted()) + _min(seqHlength - 1, _max(0, upperDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TIterator = Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig<TOP, LEFT, RIGHT, BOTTOM, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TGapsSpecH = AnchorGaps<String<GapAnchor<int> > >; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps<String<GapAnchor<int> > >; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag<Default_>; TAlgoTag = Tag<Gotoh_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   176 |     TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     177 |                                             TAlignConfig2(lowerDiag, upperDiag), TGapModel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_interface.h:430:24:   required from ‘void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   430 |     goEnd(it, container(it));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |               ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:737:10:   required from ‘void seqan::goEnd(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   737 |     goEnd(hostIterator(me));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1537:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1537 |             goEnd(finder);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |             ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = AlignTextBanded<FindPrefix, NMatchesNone_, NMatchesNone_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1646 |     return find(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:246:16:   required from ‘bool _extendLeft(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   246 |     while (find(finder, needleInfixRev, extender.patternLeft, -static_cast<int>(remainingErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  278 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  117 |     ModifiedString(typename Parameter_<THost>::Type host) :
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:989:66:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   989 |     typename Size<TFinder>::Type const columns = length(container(finder)) + state.leftClip;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                                                         ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1181 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1535 |         if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = AlignTextBanded<FindPrefix, NMatchesNone_, NMatchesNone_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:  1646 |     return find(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:320:16:   required from ‘bool _extendRight(Extender<THaystack, TNeedle, seqan::Tag<seqan::LevenshteinDistance_>, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TMaxErrors = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   320 |     while (find(finder, needlePrefix, extender.patternRight, -static_cast<int>(remainingErrors)))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  599 |     return container(hostIterator(me));
      |                                      ^
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:993:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   993 |     TConstSeqVIterator itV = begin(seqV, Rooted()) + _max(0, _min(seqVlength - 1, -lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   612 |         _computeHammingDistance(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoringScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     613 |                                 dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                 ~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  586 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = const SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:994:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   994 |     TConstSeqVIterator itVEnd = begin(seqV, Rooted()) + _min(seqVlength - 1, lowerDiagonal(band) + seqHlength);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   612 |         _computeHammingDistance(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoringScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     613 |                                 dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                 ~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  577 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   624 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted()) - _min(0, 1 + upperDiagonal(band));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   631 |     TConstSeqHIterator seqHIterBegin = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, lowerDiagonal(band)));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, AdaptorIterator<Iter<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, Packed<MMap<> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   650 |     if (seqHIterBegin == end(seqH, Rooted()) - 1)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                          ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>; TIterator = seqan::Iter<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Packed<seqan::MMap<> > >; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:381:19:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSeqHValue = SimpleType<unsigned char, Dna5_>; TSeqVValue = SimpleType<unsigned char, Dna5Q_>; TSeqVIterator = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TScoringScheme = Score<int, Tag<Simple_> >; TDPCell = DPCell_<int, Tag<AffineGaps_> >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPFinalColumn_>, Tag<PartialColumnTop_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> >, Tag<AffineGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   381 |     TSeqVIterator iter = seqBegin;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:891:38:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWiseBanded_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWiseBanded_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWiseBanded = Tag<NavigateColumnWiseBanded_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   891 |                         _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     892 |                                       sequenceEntryForScore(scoringScheme, seqH, position(seqHIter)),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     893 |                                       sequenceEntryForScore(scoringScheme, seqV, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     894 |                                       seqVBegin, seqVEnd, scoringScheme, cacheDiag, cacheVert,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     895 |                                       MetaColumnDescriptor<DPFinalColumn, PartialColumnTop>(), dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&, const TGapModel&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<const String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOn_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TGapModel = Tag<AffineGaps_>; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   308 |     return _setUpAndRunAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:    72 | class ModifiedIterator
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:287:63:   required from ‘void seqan::compare_(Lexical<TSpec>&, TLeft&, TRight&) [with TSpec = long unsigned int; TLeft = const ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TRight = const ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     typename Iterator<TRight, Standard>::Type right_it = begin(right, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                                          ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:323:13:   required from ‘void seqan::compare(Lexical<TSpec>&, const TLeft&, const TRight&) [with TSpec = long unsigned int; TLeft = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TRight = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   323 |     compare_(lexical, left, right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:170:16:   required from ‘seqan::Lexical<TSpec>::Lexical(const TLeft&, const TRight&) [with TLeft = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TRight = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   170 |         compare(*this, left, right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:750:38:   required from ‘typename seqan::Size<T>::Type seqan::lcpLength(const TLeft&, const TRight&) [with TLeft = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TRight = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   750 |     typename Comparator<TLeft>::Type _lex(left, right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                      ^~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:222:24:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  124 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<const T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   392 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:509:41:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWise&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOff_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWise = Tag<NavigateColumnWise_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   509 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOff_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOff_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39:   required from ‘void verify(Verifier<THaystack, TNeedle, seqan::Tag<seqan::AffineGaps_> >&, const TNeedle&, THaystackPos, THaystackPos, TErrors, TErrors, TDelegate&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TDelegate = AnchorsVerifier<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   112 |     int errors = _setUpAndRunAlignment(me.dpContext,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
     113 |                                        me.traceSegments,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~~
     114 |                                        me.dpScoutState,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~
     115 |                                        source(contigGaps),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~~~~
     116 |                                        source(readGaps),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~~
     117 |                                        Score<int>(0, -1000, -999, -1001),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     118 |                                        TAlignConfig2()) / -999;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                                        ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_verifier.h:193:11:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  351 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TagSpec> >::Type seqan::end(const T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   520 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:510:37:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWise&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOff_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWise = Tag<NavigateColumnWise_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   510 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOff_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOff_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39:   required from ‘void verify(Verifier<THaystack, TNeedle, seqan::Tag<seqan::AffineGaps_> >&, const TNeedle&, THaystackPos, THaystackPos, TErrors, TErrors, TDelegate&) [with THaystack = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::Owner<seqan::ConcatDirect<Limits<long unsigned int> > > >; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TErrors = long unsigned int; TDelegate = AnchorsVerifier<void, MapperTraits<void, ReadMapperConfig<seqan::Tag<seqan::Parallel_>, seqan::Tag<PairedEnd_>, seqan::Tag<Strata_>, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   112 |     int errors = _setUpAndRunAlignment(me.dpContext,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
     113 |                                        me.traceSegments,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~
     114 |                                        me.dpScoutState,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~
     115 |                                        source(contigGaps),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~
     116 |                                        source(readGaps),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~
     117 |                                        Score<int>(0, -1000, -999, -1001),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     118 |                                        TAlignConfig2()) / -999;
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                        ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_verifier.h:193:11:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  486 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type seqan::end(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   512 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   458 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:287:63:   required from ‘void seqan::compare_(Lexical<TSpec>&, TLeft&, TRight&) [with TSpec = long unsigned int; TLeft = const ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TRight = const ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     typename Iterator<TRight, Standard>::Type right_it = begin(right, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                          ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:323:13:   required from ‘void seqan::compare(Lexical<TSpec>&, const TLeft&, const TRight&) [with TSpec = long unsigned int; TLeft = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >; TRight = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   323 |     compare_(lexical, left, right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:170:16:   required from ‘seqan::Lexical<TSpec>::Lexical(const TLeft&, const TRight&) [with TLeft = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Packed<seqan::MMap<> > >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TRight = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = long unsigned int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   170 |         compare(*this, left, right);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:750:38:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  478 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<TObject, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<TObject, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25:   required from ‘typename seqan::DisableIf<seqan::Is<seqan::StlContainerConcept<typename seqan::RemoveReference<T>::Type> >, typename seqan::Iterator<T, const seqan::Tag<TagSpec> >::Type>::Type seqan::begin(T&, Tag<TagSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf<Is<StlContainerConcept<typename RemoveReference<T>::Type> >, typename Iterator<T, const Tag<TagSpec> >::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename RemoveReference<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<TagSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   385 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:503:103:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TagSpec> >::Type seqan::end(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TagSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TagSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   503 |     typename Iterator<ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                                                                                                  ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:994:21:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   994 |         ndlEnd = end(needle, Standard());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                  ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1181 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1535 |         if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>; TStrategy = seqan::Tag<All_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<SingleEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   402 |         return configureMapper(options, threading, sequencing, All());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   413 |         configureMapper(options, threading, SingleEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  343 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:382:27:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSeqHValue = SimpleType<unsigned char, Dna5_>; TSeqVValue = SimpleType<unsigned char, Dna5Q_>; TSeqVIterator = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TScoringScheme = Score<int, Tag<Simple_> >; TDPCell = DPCell_<int, Tag<AffineGaps_> >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPInitialColumn_>, Tag<FullColumn_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> >, Tag<AffineGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   382 |     for (; iter != seqEnd - 1; ++iter)
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                    ~~~~~~~^~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:453:18:   required from ‘void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSeqHValue = SimpleType<unsigned char, Dna5_>; TSeqVValue = SimpleType<unsigned char, Dna5Q_>; TSeqVIterator = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TScoringScheme = Score<int, Tag<Simple_> >; TColumnDescriptor = MetaColumnDescriptor<Tag<DPInitialColumn_>, Tag<FullColumn_> >; TDPProfile = DPProfile_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> >, Tag<AffineGaps_>, TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >, Tag<Serial_> >]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   453 |     _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqHValue, seqVValue, seqBegin, seqEnd,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     454 |                   scoringScheme, cacheDiag, cacheVert, TColumnDescriptor{}, TDPProfile{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:515:18:   required from ‘void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec, TExecPolicy>&, const NavigateColumnWise&) [with TDPScout = DPScout_<DPCell_<int, Tag<AffineGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<True, False, True, False> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<AffineGaps_> >, Tag<SparseDPMatrix_>, String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> > >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_>, String<unsigned char> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBandConfig<Tag<BandOff_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapCosts = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; NavigateColumnWise = Tag<NavigateColumnWise_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   515 |     _computeTrack(scout, dpScoreMatrixNavigator, dpTraceMatrixNavigator,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     516 |                   sequenceEntryForScore(scoringScheme, seqH, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     517 |                   sequenceEntryForScore(scoringScheme, seqV, 0),
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     518 |                   seqVBegin, seqVEnd, scoringScheme,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     519 |                   MetaColumnDescriptor<DPInitialColumn, FullColumn>(), dpProfile);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26:   required from ‘typename seqan::Value<TScoreScheme>::Type seqan::_computeAlignment(DPContext<TScoreValue, TGapCosts, TScoreMatHost, TTraceMatHost>&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig<TBandSwitch>&, const DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy>&) [with TDPScoreValue = DPCell_<int, Tag<AffineGaps_> >; TTraceValue = unsigned char; TScoreMatHost = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMatHost = String<unsigned char>; TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOff_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<True, False, True, False> >; TGapScheme = Tag<AffineGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; TExecPolicy = Tag<Serial_>; typename Value<TScoreScheme>::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:  1417 |     _computeAlignmentImpl(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1418 |                           dpProfile, TNavigationSpec{});
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29:   required from ‘typename seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(DPContext<DPCell_<TScoreValue, TGapCostFunction>, TTraceValue, TScoreMat, TTraceMat>&, String<TChar, TStringSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue2, TScoreSpec>&, const AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with TScoreValue = int; TGapSpec = Tag<AffineGaps_>; TTraceValue = unsigned char; TScoreMat = String<DPCell_<int, Tag<AffineGaps_> >, Alloc<> >; TTraceMat = String<unsigned char>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TDPScoutStateSpec = Tag<Default_>; TSequenceH = Segment<const String<SimpleType<unsigned char, Dna5_>, Packed<MMap<> > >, InfixSegment>; TSequenceV = Segment<String<SimpleType<unsigned char, Dna5Q_>, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag<Simple_>; TDPType = GlobalAlignment_<>; TBand = DPBandConfig<Tag<BandOff_> >; TFreeEndGaps = FreeEndGaps_<True, False, True, False>; TTraceConfig = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<Score<TScoreValue2, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   287 |     return _computeAlignment(dpContext, traceSegments, dpScoutState, seqH, seqV, scoringScheme, alignConfig._band,
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     288 |                              TDPProfile());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                              ~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   347 |         spawnMapper<TContigsSize, TContigsLen, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   360 |         configureMapper<TContigsSize, uint32_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>; TStrategy = seqan::Tag<Strata_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   377 |         configureMapper<uint8_t>(options, threading, sequencing, strategy);
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31:   required from ‘void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag<seqan::Parallel_>; TSequencing = seqan::Tag<PairedEnd_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   399 |         return configureMapper(options, threading, sequencing, Strata());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24:   required from ‘void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   415 |         configureMapper(options, threading, PairedEnd());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24:   required from here
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   422 |         configureMapper(options, Parallel());
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  647 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >]’
  143 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  116 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
[100%] Linking CXX executable ../../bin/yara_mapper
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper  -lrt -lz -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  211 |     data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[100%] Built target yara_mapper
make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zkjJH9
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-seqan-v2.4.0
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64 'INSTALL=/usr/bin/install -p' -C build/library
make: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/README.rst
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/CHANGELOG.rst
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/lib64/pkgconfig/seqan-2.pc
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/lib64/cmake/seqan2/seqan-config.cmake
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_cols.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_config.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_interface_wrapper.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_iterator_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_metafunctions.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/align_traceback.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/aligned_sequence_concept.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/alignment_algorithm_tags.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/alignment_operations.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_algorithm_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_align_simd_helper.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_band.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_cell.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_cell_affine.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_cell_dynamic.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_cell_linear.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_context.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_formula.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_formula_affine.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_formula_dynamic.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_formula_linear.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix_navigator.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix_navigator_score_matrix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix_navigator_trace_matrix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_matrix_sparse.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_meta_info.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_profile.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_scout.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_scout_simd.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_setup.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_trace_segment.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_traceback_adaptor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/dp_traceback_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/evaluate_alignment.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/fragment.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gap_anchor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gapped_value_type.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_anchor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_array.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_iterator_anchor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_iterator_array.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/gaps_iterator_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_banded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_hirschberg_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_myers_hirschberg_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_myers_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_specialized.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/global_alignment_unbanded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_banded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_banded_waterman_eggert_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_enumeration.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_enumeration_banded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_enumeration_unbanded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_unbanded.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/local_alignment_waterman_eggert_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align/matrix_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_extend.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_extend/align_extend.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_extend/align_extend_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_extend/dp_scout_xdrop.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/async_wave_execution_interface.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_kernel_adaptor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_parallel_execution_policies.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_parallel_scout.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_parallel_scout_simd.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_settings.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/dp_traits.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/parallel_align_interface.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_alignment_executor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_alignment_result.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_alignment_scheduler.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_alignment_task.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_alignment_thread_local_storage.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task_event.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task_executor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task_queue.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task_scheduler.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_parallel/wavefront_task_util.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_profile.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_profile/add_to_profile.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_profile/score_profile_seq.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_split.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_split/align_split_interface.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/align_split/dp_scout_split.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/af_d2.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/af_d2star.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/af_d2z.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/af_n2.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/alignment_free_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/alignment_free_comparison.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/alignment_free/kmer_functions.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_argument.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_ctd_support.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_doc.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_exceptions.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_option.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_parse.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_type_support.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/arg_parse_version_check.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/argument_parser.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/arg_parse/tool_doc.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/journaled_set.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/journaled_string_tree/jst_extension_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/journaled_string_tree/jst_extension_shiftand.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/modifier/modifier_view.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/parallel/parallel_serializer.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/parallel/parallel_splitting.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/parallel/parallel_tags.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/parallel/parallel_thread_pool.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/parse_lm.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/rna_io.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/roi_io.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/score.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/score/score_simple.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_extension.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_global_chaining.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_global_chaining_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_diagonal.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_set_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_set_non_scored.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_set_scored.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_set_unordered.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seeds/seeds_seed_simple.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/bam_sam.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/fai_index.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/fasta_fastq.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/genomic_region.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/read_embl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/read_genbank.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/seq_io/sequence_file.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/adapt_array_pointer.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/adapt_stl_container.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/container_view.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/container_view_zip.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/iter_concat_virtual.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/segment_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/segment_infix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/segment_prefix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/segment_suffix.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/segment_utils.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/sequence_concatenator.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/sequence_forwards.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/sequence_interface.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/sequence_lexical.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/sequence_shortcuts.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_alloc.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_array.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_block.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_cstyle.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_packed.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_set_base.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_set_owner.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_set_segment.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence/string_set_view.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence_journaled.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence_journaled/journal_entries_sorted_array.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence_journaled/journal_entry.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence_journaled/sequence_journaled.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/sequence_journaled/sequence_journaled_iterator.h
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_seqan_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_seqan_impl_avx2.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_seqan_impl_avx512.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_seqan_impl_sse4.2.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_seqan_interface.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simd/simd_base_umesimd_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simple_intervals_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simple_intervals_io/simple_intervals_file.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/simple_intervals_io/simple_intervals_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/statistics.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/statistics/statistics_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/statistics/statistics_markov_model.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_align.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_align_intervals.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_all.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_annotation.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_contig.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_intervaltree.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_io_gff.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_io_sam.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_io_ucsc.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_library.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_matepair.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/store/store_read.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/adapt_ios.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/buffered_stream.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/file_stream.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/formatted_file.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/guess_format.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_bgzf.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_bzip2.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_bzip2_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_zip.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_zip_impl.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iostream_zutil.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/iter_stream.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/lexical_cast.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/stream_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/stream_compressor.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/tokenization.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/stream/virtual_stream.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/file_async.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/file_directory.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/file_forwards.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/file_sync.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/system_base.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/system_event_win.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/system/system_forwards.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/tabix_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/tabix_io/tabix_index_tbi.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/translation.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/translation/translation.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/translation/translation_tables.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/ucsc_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/ucsc_io/ucsc_file.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/ucsc_io/ucsc_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/ucsc_io/ucsc_record.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/read_vcf.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_file.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_header.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_header_record.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_io_context.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_record.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/vcf_io/write_vcf.h
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/include/seqan2/seqan/version.h
make: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library'
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[  4%] Built target dfi
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cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
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make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  7%] Built target fiona
/usr/bin/make  -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[  9%] Built target fiona_illumina
/usr/bin/make  -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 10%] Built target fx_bam_coverage
/usr/bin/make  -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 12%] Built target fx_fastq_stats
/usr/bin/make  -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 14%] Built target gustaf
/usr/bin/make  -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 15%] Built target gustaf_mate_joining
/usr/bin/make  -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 17%] Built target insegt
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 25%] Built target mason_sim
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 26%] Built target mason_genome
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 28%] Built target mason_methylation
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 29%] Built target mason_frag_sequencing
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Built target mason_variator
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 31%] Built target mason_materializer
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 32%] Built target mason_simulator
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 34%] Built target mason_splicing
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 35%] Built target mason_tests
/usr/bin/make  -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 37%] Built target micro_razers
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 39%] Built target roi_plot_thumbnails
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 42%] Built target bam2roi
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 45%] Built target roi_feature_projection
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_global_1111
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_lcs
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 46%] Built target pair_align_local
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Built target pair_align_global_0000
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 48%] Built target pair_align_global_0001
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Built target pair_align_global_0010
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 50%] Built target pair_align_global_0011
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Built target pair_align_global_0100
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 51%] Built target pair_align_global_0101
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_0110
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_0111
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 53%] Built target pair_align_global_1000
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Built target pair_align_global_1001
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 54%] Built target pair_align_global_1010
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Built target pair_align_global_1011
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 56%] Built target pair_align_global_1100
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Built target pair_align_global_1101
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 57%] Built target pair_align_global_1110
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 59%] Built target pair_align_lib
/usr/bin/make  -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/pair_align/CMakeFiles/pair_align.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 60%] Built target pair_align
/usr/bin/make  -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 62%] Built target param_chooser
/usr/bin/make  -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 64%] Built target test_funcs_param_chooser
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 65%] Built target rabema_prepare_sam
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 67%] Built target rabema_build_gold_standard
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 68%] Built target rabema_evaluate
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 70%] Built target rabema_do_search
/usr/bin/make  -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 71%] Built target razers
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 73%] Built target razers3
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 75%] Built target razers3_simulate_reads
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 76%] Built target razers3_quality2prob
/usr/bin/make  -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 78%] Built target rep_sep
/usr/bin/make  -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 79%] Built target sak
/usr/bin/make  -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Built target sam2matrix
/usr/bin/make  -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 81%] Built target samcat
/usr/bin/make  -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 82%] Built target s4_search
/usr/bin/make  -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 84%] Built target s4_join
/usr/bin/make  -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 85%] Built target seqan_tcoffee
/usr/bin/make  -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 89%] Built target seqcons2
/usr/bin/make  -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 90%] Built target sgip
/usr/bin/make  -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 92%] Built target snp_store
/usr/bin/make  -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 93%] Built target splazers
/usr/bin/make  -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 95%] Built target stellar
/usr/bin/make  -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 96%] Built target tree_recon
/usr/bin/make  -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_indexer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[ 98%] Built target yara_indexer
/usr/bin/make  -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/make  -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_mapper.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
[100%] Built target yara_mapper
make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/alf
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/alf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/alf/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/alf/example/small.fasta
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/bisar
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/casbar
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/four2three
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/bs_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/bs_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/dfi
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/dfi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/dfi/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/dfi/example/fasta1.fa
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/dfi/example/fasta2.fa
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Change Dir: '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile sak_doc
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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/seqcons2
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/seqcons2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/seqcons2/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/sgip
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/iso_m2D_m196.A01
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/iso_r01_m200.A00
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/iso_r01_m200.A01
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/iso_r01_m200.B00
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/iso_r01_m200.B01
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/latin-4
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/lattice-4
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/sgip/example/sts-7
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/snp_store
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/snp_store/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/snp_store/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/snp_store/example/exampleGenome.fa
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/snp_store/example/exampleReads.gff
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/splazers
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/splazers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/splazers/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/splazers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/splazers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/splazers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/stellar
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/stellar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/stellar/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/stellar/example/NC_001474.fasta
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/stellar/example/NC_001477.fasta
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/stellar/example/reads.fasta
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/tree_recon
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/tree_recon/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/tree_recon/README
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/tree_recon/example/example.dist
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/yara_indexer
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/yara_mapper
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/yara/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/yara/README.rst
make: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release'
+ chmod a+x /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/alf /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/bam2roi /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/bed_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/bisar /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/casbar /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/compute_gain /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/dfi /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/fiona /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/four2three /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/fx_bam_coverage /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/gff_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/gustaf /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/gustaf_mate_joining /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/insegt /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_frag_sequencing /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_genome /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_materializer /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_methylation /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_simulator /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_splicing /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/mason_variator /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/micro_razers /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/pair_align /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/param_chooser /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/rabema_build_gold_standard /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/rabema_evaluate /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/rabema_prepare_sam /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/razers /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/razers3 /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/rep_sep /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/roi_feature_projection /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/roi_plot_9.sh /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/roi_plot_thumbnails /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/roi_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/s4_join /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/s4_search /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/sak /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/sam2matrix /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/samcat /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/seqan_tcoffee /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/seqcons2 /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/sgip /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/snp_store /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/splazers /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/stellar /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/tree_recon /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/yara_indexer /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/yara_mapper
+ ln -s /usr/share/seqan2/pdf_plot_helper/plot.awk /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/plot.awk
+ ln -s /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/bin/ps2pswLinks.gawk
+ rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/libexec/seqan2/examples/ngs_roi/R
+ rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/LICENSE
+ rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/CHANGELOG.rst
+ rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2/README.rst
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.0-22.fc40 --unique-debug-suffix -2.4.0-22.fc40.x86_64 --unique-debug-src-base seqan2-2.4.0-22.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-seqan-v2.4.0
find-debuginfo: starting
Extracting debug info from 44 files
DWARF-compressing 44 files
sepdebugcrcfix: Updated 44 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/seqan2-2.4.0-22.fc40.x86_64
23498 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/roi_plot_9.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/roi_sort.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/gff_sort.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/bed_sort.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: seqan2-apps-2.4.0-22.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.g5RGLy
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-seqan-v2.4.0
+ DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-apps
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-apps
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.tzUnIm
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-seqan-v2.4.0
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bs_tools-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_tools-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason2-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/ngs_roi-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers3-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/searchjoin-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons2-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/yara-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema-COPYING /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-apps
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/bin/plot.awk -> /usr/share/seqan2/pdf_plot_helper/plot.awk
warning: absolute symlink: /usr/bin/ps2pswLinks.gawk -> /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk
Provides: seqan = 0:2.4.0-22.fc40 seqan2-apps = 2.4.0-22.fc40 seqan2-apps(x86-64) = 2.4.0-22.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Obsoletes: seqan <= 0:1.4.2
Processing files: seqan2-headers-2.4.0-22.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Eg8cR8
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-seqan-v2.4.0
+ DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-headers
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-headers
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-headers
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/doc/seqan2-headers
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9UE2gv
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-seqan-v2.4.0
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-headers
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-headers
+ cp -pr /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64/usr/share/licenses/seqan2-headers
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(bzip2stream) bundled(zipstream) cmake(seqan) pkgconfig(seqan-2) = 2.4.0 seqan2-headers = 2.4.0-22.fc40 seqan2-headers(x86-64) = 2.4.0-22.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config cmake-filesystem(x86-64) pkgconfig(zlib)
Processing files: seqan2-examples-2.4.0-22.fc40.x86_64
Provides: seqan2-examples = 2.4.0-22.fc40 seqan2-examples(x86-64) = 2.4.0-22.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan2-debugsource-2.4.0-22.fc40.x86_64
Provides: seqan2-debugsource = 2.4.0-22.fc40 seqan2-debugsource(x86-64) = 2.4.0-22.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan2-apps-debuginfo-2.4.0-22.fc40.x86_64
Provides: debuginfo(build-id) = 011a49eb83129aa24f11a3d51f592cdccfd04617 debuginfo(build-id) = 02fc417618a9ec3d57f3ef34ea29bffb57c68228 debuginfo(build-id) = 07b91d6ce0f90a00c29bebe6fec3b0f8e9d5ad3d debuginfo(build-id) = 12516bb81791ccccbaf4e413abe6011cb46bc494 debuginfo(build-id) = 14720fabdaf8058d356ccf5f433168d268129aaf debuginfo(build-id) = 170ffa5643fd4d4d4b3c531721e09a1a27b2578e debuginfo(build-id) = 21314f114cfe4373850b958c4cf497959149c437 debuginfo(build-id) = 214ec683185ba472e42a2dabea6089631264f941 debuginfo(build-id) = 218dafb56217aba110b200311842f45b3735691c debuginfo(build-id) = 2dc51dbb85cbd176bf87186f20986487104ceba0 debuginfo(build-id) = 2ec183f179120f1ec5d93c5064c9996f20fe5304 debuginfo(build-id) = 32b08b46cdda95ce65e2cfb98c3e897d0628b3c2 debuginfo(build-id) = 37800138ab95b191e27b71bd0f1460bbe2841171 debuginfo(build-id) = 381af188481dd8896f2ee2544aff5f7186a3df03 debuginfo(build-id) = 3b051dca5f90bc680a2a24147ad21d7975405b7e debuginfo(build-id) = 3d2f585e5692daaf84433969f04b0db4d240820a debuginfo(build-id) = 3ea0488711568aa26800166272969475d7485c72 debuginfo(build-id) = 5509fa4e1c333c7fcce4324025d5c74ce8c36c6c debuginfo(build-id) = 5c18903358258dd0cf14316d214ceab4cb5f6395 debuginfo(build-id) = 6640aaad98c2827cd31da6d64da74ab1093a1647 debuginfo(build-id) = 6980b032a95f5dbea96bd8660542603e92183f28 debuginfo(build-id) = 7ad7bf387bc4a85e8f83e1f4a3762abbf0ad6d81 debuginfo(build-id) = 7ec97f9ee99d1d099f66968495c330cc04ef7279 debuginfo(build-id) = 903fbff3a2c2bc9b372b919af6dec66f951daae9 debuginfo(build-id) = 90d9f4b2bf48b4f36b19ef2c643044e2ced58555 debuginfo(build-id) = 91b2ce8794948647ed50eb9e2ff5edf73af9ac7f debuginfo(build-id) = 99520cac0167e4e1ab78b728183d94e3af47edbc debuginfo(build-id) = 9d423d7c62feb9fab574d3a9352828cb2e92fb6c debuginfo(build-id) = 9ea7eeeacb4337e0476bda7b5dec6c52240f1ce5 debuginfo(build-id) = a31b559a18e97a4e2689c5fe789c00c7b2382b17 debuginfo(build-id) = a9061058536e5fc81139f5b5b495061599fbd94d debuginfo(build-id) = ac018bcdd4e7fa6ffc9acbda5805ab9abd3b05d9 debuginfo(build-id) = b06c6c884510730b8da4283379281138bf0d4227 debuginfo(build-id) = b227d8b949c60d2952ab70366a282b2932e75758 debuginfo(build-id) = b840b24756d1db0a6f065064e0c555cd41c92cf8 debuginfo(build-id) = c44ffa73660ee04533b4902bef547ad2fa0d31dd debuginfo(build-id) = c6bb177a9ffa996ed785306729333c0963724602 debuginfo(build-id) = cc9c9fabda5176c0fb826f94efc02a2c07cc22dc debuginfo(build-id) = d093deb21a754f6da466e4de333526d183042ea7 debuginfo(build-id) = e73ea495f9b0a6beb001df7dc6ef8f5683604dbb debuginfo(build-id) = f0d7744db8a5d7b042b99edc19906d7aa62bf70f debuginfo(build-id) = f55b46d090a202ac65a90038819fc349797ca22a debuginfo(build-id) = fad2010f83b3240e214774763a2e21df22754077 debuginfo(build-id) = fbfb9e0d5d29715e3c1fc9b7ae0b53d603c1156b seqan2-apps-debuginfo = 2.4.0-22.fc40 seqan2-apps-debuginfo(x86-64) = 2.4.0-22.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seqan2-debugsource(x86-64) = 2.4.0-22.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64
Wrote: /builddir/build/RPMS/seqan2-apps-2.4.0-22.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan2-headers-2.4.0-22.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan2-debugsource-2.4.0-22.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan2-examples-2.4.0-22.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan2-apps-debuginfo-2.4.0-22.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Pn5M29
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-seqan-v2.4.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-22.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.MbzU2f
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/seqan-seqan-v2.4.0-SPECPARTS
+ rm -rf seqan-seqan-v2.4.0 seqan-seqan-v2.4.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    absolute symlink: /usr/bin/plot.awk -> /usr/share/seqan2/pdf_plot_helper/plot.awk
    absolute symlink: /usr/bin/ps2pswLinks.gawk -> /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk
Finish: rpmbuild seqan2-2.4.0-22.fc40.src.rpm
Finish: build phase for seqan2-2.4.0-22.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706587000.260269/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/seqan2-2.4.0-22.fc40.src.rpm) Config(child) 59 minutes 9 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "seqan2-apps",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "x86_64"
        },
        {
            "name": "seqan2-debugsource",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "x86_64"
        },
        {
            "name": "seqan2",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "src"
        },
        {
            "name": "seqan2-headers",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "x86_64"
        },
        {
            "name": "seqan2-examples",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "x86_64"
        },
        {
            "name": "seqan2-apps-debuginfo",
            "epoch": null,
            "version": "2.4.0",
            "release": "22.fc40",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished